Protein Alignment RpII33 and CG3756

DIOPT Version :9

• Sequence 1: NP_477419.1
• Gene: RpII33 / 34796
• FlyBaseID: FBgn0026373
• Length: 275
• Species: Drosophila melanogaster
• Sequence 2: NP_608885.1
• Gene: CG3756 / 33712
• FlyBaseID: FBgn0031657
• Length: 333
• Species: Drosophila melanogaster
• Alignment Length: 302
• Identity: 88/302 - (29%)
• Similarity: 147/302 - (48%)
• Gaps: 54/302 - (17%)

  Fly     9 VQITELTDDNVKFVLEDTELSVANSLRRVFIAETPTLAIDWVQLEANSTVLSDEFLAHRIGLIPL 73
            ::|....:|.::|.|.....::||:.||:.:::.|::||:.|.:..|::::.||.||||:||:||
  Fly    43 IKIVRNDEDGLEFDLIGVYPAIANAFRRLMLSDVPSMAIEKVYIYNNTSIIQDEVLAHRMGLLPL 107

  Fly    74 ISDDVVERL-QYTRDCICLDFCPECSVEFTLDVKCSEEQTRHVTTAD---------LKSSNAKVL 128
            .:|   .|| .|..:........:.::||.|.||||..:......::         :.|.:.|.|
  Fly   108 RAD---PRLFAYRTEESTEAGTEQDTLEFELKVKCSRRRDAGKDQSNFDDIYKNHKVYSGHLKWL 169

  Fly   129 PVTSRNQGEEDNEYGES-----NDEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVCFEYD 188
            |     :|::...|.||     :|:|||.:||.|.||.||..|.||.|::|||::|.|...:...
  Fly   170 P-----KGKQAQIYSESAVNCIHDDILIAQLRPGHELDLRLVAVKGLGRDHAKFSPVATATYRLL 229

  Fly   189 PDNSMRHTLYPKP---------------DEWPKSEHTELEDDQYEA--------PYNWEAKP--- 227
            |...:...:..|.               ||   :|...::|.:|:.        |...:|..
  Fly   230 PMIKLNREVTGKDAYLLQNCFSPGVIGIDE---NETAYVKDARYDTCSRNVYRYPQLNDAVTLAR 291

  Fly   228 --NKFFFNVESAGALKPENIVVMGVQVLKNKLSNLQTQLSHE 267
              :.:.|:|||.|||||:.|.:..|:|||.|...|..::..|
  Fly   292 IRDHYIFSVESVGALKPDVIFLEAVKVLKRKCRALIDEIEAE 333

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
RpII33	NP_477419.1	RNAP_II_RPB3	7..267	CDD:132909	87/300 (29%)
		RPOLD	19..261	CDD:214766	84/284 (30%)
CG3756	NP_608885.1	RNAP_I_II_AC40	41..329	CDD:132910	87/296 (29%)
		RPOLD	53..327	CDD:214766	84/284 (30%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C45469322
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_COG0202
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D834009at2759
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	P	PTHR11800
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
	5	4.850