Protein Alignment RpII33 and Polr1c

DIOPT Version :9

• Sequence 1: NP_477419.1
• Gene: RpII33 / 34796
• FlyBaseID: FBgn0026373
• Length: 275
• Species: Drosophila melanogaster
• Sequence 2: NP_001008331.1
• Gene: Polr1c / 301246
• RGDID: 1309689
• Length: 346
• Species: Rattus norvegicus
• Alignment Length: 315
• Identity: 80/315 - (25%)
• Similarity: 137/315 - (43%)
• Gaps: 84/315 - (26%)

  Fly     9 VQITELTDDNVKFVLEDTELSVANSLRRVFIAETPTLAIDWVQLEANSTVLSDEFLAHRIGLIPL 73
            |.:..:.:..::|.:...:.::||:.||:.:||.||:|::.|.:..|::::.||.||||:||||:
  Rat    51 VDVVHMDESTLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPI 115

  Fly    74 ISDDVVERL-QY----TRDCICLDFCPECSVEFTLDVKCSEE-------------------QTRH 114
            ::|   .|| :|    ..:...:|     :::|.|.|:|:..                   .|||
  Rat   116 LAD---PRLFEYRNPGEEEGTEID-----TLQFRLQVRCTRNPSAAKDSSDPNELYVNHKVYTRH 172

  Fly   115 VTTADLKSSNAKVLPVTSRNQGEEDNEYGESNDEILIIKLRKGQELKLRAYAKKGFGKEHAKWNP 179
            :|...| .:.|.|.|         :......:|:|||.:||.|||:.|..:..||.||:|||::|
  Rat   173 MTWVPL-GNQADVFP---------EGTVRPVHDDILIAQLRPGQEIDLMMHCVKGIGKDHAKFSP 227

  Fly   180 TAGVCFEYDPDNSMRHTLYPKPDEWPKSEHTELED-------------------------DQYEA 219
            .|...:...||.::.     :|.|...:|  ||..                         |.:..
  Rat   228 VATASYRLLPDITLL-----EPVEGEAAE--ELSQCFSPGVIAVQEVQGKKVARVANARLDTFSR 285

  Fly   220 PYNWEAKPNK----------FFFNVESAGALKPENIVVMGVQVLKNKLSNLQTQL 264
            ......|..|          :.|:|||.|.|.|:.:|...:::|..|......:|
  Rat   286 EIFRHEKLKKAVRLARVRDHYIFSVESTGVLPPDVLVSEAIKILMGKCRRFLDEL 340

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
RpII33	NP_477419.1	RNAP_II_RPB3	7..267	CDD:132909	80/315 (25%)
		RPOLD	19..261	CDD:214766	78/300 (26%)
Polr1c	NP_001008331.1	RNAP_I_II_AC40	49..339	CDD:132910	79/312 (25%)
		RPOLD	61..336	CDD:214766	78/299 (26%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_COG0202
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D834009at2759
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	4	3.820