DRSC/TRiP Functional Genomics Resources

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Protein Alignment RpII33 and Polr1c

DIOPT Version :9

Sequence 1:NP_477419.1 Gene:RpII33 / 34796 FlyBaseID:FBgn0026373 Length:275 Species:Drosophila melanogaster
Sequence 2:NP_033111.2 Gene:Polr1c / 20016 MGIID:103288 Length:346 Species:Mus musculus


Alignment Length:310 Identity:79/310 - (25%)
Similarity:139/310 - (44%) Gaps:74/310 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 VQITELTDDNVKFVLEDTELSVANSLRRVFIAETPTLAIDWVQLEANSTVLSDEFLAHRIGLIPL 73
            |.:.::.:|.::|.:...:.::||:.||:.:||.||:|::.|.:..|::::.||.||||:||||:
Mouse    51 VDVVQMDEDTLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPI 115

  Fly    74 ISDDVV--ERLQYTRDCICLDFCPECSVEFTLDVKCSEE-------------------QTRHVTT 117
            ::|..:  .|.|...:...:|     :::|.|.|:|:..                   .|||:|.
Mouse   116 LADPRLFEYRNQGEEEGTEID-----TLQFRLQVRCTRNPNAAKDSSDPNELYVNHKVYTRHMTW 175

  Fly   118 ADLKSSNAKVLPVTSRNQGEEDNEYGESNDEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAG 182
            ..| .:.|.|.|         :......:|:|||.:||.|||:.|..:..||.||:|||::|.|.
Mouse   176 VPL-GNQADVFP---------EGTIRPVHDDILIAQLRPGQEIDLMMHCVKGIGKDHAKFSPVAT 230

  Fly   183 VCFEYDPDNSMRHTLYPKPDEWPKSEH---------TELED--------------DQYEAPYNWE 224
            ..:...|..::.     :|.|...:|.         .|:|:              |.:.......
Mouse   231 ASYRLLPAITLL-----EPVEGEAAEELSQCFSPGVIEVEEVQGKKVARVANARLDTFSREIFRH 290

  Fly   225 AKPNK----------FFFNVESAGALKPENIVVMGVQVLKNKLSNLQTQL 264
            .|..|          :.|:|||.|.|.|:.:|...:::|..|......:|
Mouse   291 EKLKKAVRLARVRDHYIFSVESTGVLPPDVLVSEAIKILMGKCRRFLDEL 340

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpII33NP_477419.1 RNAP_II_RPB3 7..267 CDD:132909 79/310 (25%)
RPOLD 19..261 CDD:214766 76/295 (26%)
Polr1cNP_033111.2 RNAP_I_II_AC40 49..339 CDD:132910 78/307 (25%)
RPOLD 61..336 CDD:214766 76/294 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0202
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D834009at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.820

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