Protein Alignment RpII33 and rpac-40

DIOPT Version :9

• Sequence 1: NP_477419.1
• Gene: RpII33 / 34796
• FlyBaseID: FBgn0026373
• Length: 275
• Species: Drosophila melanogaster
• Sequence 2: NP_504166.2
• Gene: rpac-40 / 178823
• WormBaseID: WBGene00019275
• Length: 366
• Species: Caenorhabditis elegans
• Alignment Length: 317
• Identity: 91/317 - (28%)
• Similarity: 150/317 - (47%)
• Gaps: 60/317 - (18%)

  Fly     3 YANQPSVQITELTDD--NVKFVLEDTELSVANSLRRVFIAETPTLAIDWVQLEANSTVLSDEFLA 65
            |.:|..|.:...:||  .::|.:...|..:||:||||.|||.||:|::.:.|..|::|:.||.|.
 Worm    50 YCDQIQVAMVNESDDGMTLEFDITRIEAPIANALRRVLIAEVPTMALEKIYLYQNTSVIQDEVLC 114

  Fly    66 HRIGLIPLISDDVVERLQYTR-----------DCICLDFCPE----CSVEFTLDVKCSEEQTRHV 115
            ||:||:||..|.  ...|:.:           ||   |..||    .::.|.::|.|::.:....
 Worm   115 HRLGLLPLRVDP--RGFQFPKEKVVGINEKGVDC---DEEPEGDPAKNLIFKINVSCTKNRNAVP 174

  Fly   116 TTADLKS--SNAKV-------LPVT-SRNQGEEDNEYGESNDEILIIKLRKGQELKLRAYAKKGF 170
            |..|.|.  .|:.|       :|:. .:.|..|:......:|:||:.|||.|||::...:|.||.
 Worm   175 TATDPKQLYHNSSVYSRAFEWVPIADQKTQFTEEAHPRMVSDDILVAKLRPGQEIEASCHAVKGI 239

  Fly   171 GKEHAKWNPTAGVCFEYDPDNSMRHTLYPKPDEWPKSEHTE---------------LEDDQYEA- 219
            |::|||::|.|...:...|...:...:..:..|..||..:|               ::|.:.:.
 Worm   240 GRDHAKFSPVATASYRLLPTIRLNAEISGEAAERLKSVFSEGVIAIEKKGAKRIAVVKDARKDTC 304

  Fly   220 ---PYNWE-------AKPNK--FFFNVESAGALKPENIVVMGVQVLKNKLSNLQTQL 264
               .:..|       ...||  |.|:|||.||||...:||...:|::.|..:|:.|:
 Worm   305 SRNVFRHEDLSKVVQLGKNKQHFIFSVESTGALKSSELVVEACKVMEIKCRSLRKQI 361

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
RpII33	NP_477419.1	RNAP_II_RPB3	7..267	CDD:132909	89/313 (28%)
		RPOLD	19..261	CDD:214766	84/294 (29%)
rpac-40	NP_504166.2	RNAP_I_II_AC40	54..358	CDD:132910	87/308 (28%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_COG0202
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D834009at2759
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	4	3.820