Sequence 1: | NP_476596.1 | Gene: | Arpc1 / 34793 | FlyBaseID: | FBgn0001961 | Length: | 377 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_112408.1 | Gene: | Arpc1a / 81824 | RGDID: | 620834 | Length: | 370 | Species: | Rattus norvegicus |
Alignment Length: | 362 | Identity: | 210/362 - (58%) |
---|---|---|---|
Similarity: | 264/362 - (72%) | Gaps: | 5/362 - (1%) |
- Green bases have known domain annotations that are detailed below.
Fly 11 LASITCHAWNKDRTQIALSPNNHEIHIYSREGSDWKLADVLNQHDLRVMGIDWAKNTNRIVSCAA 75
Fly 76 DRNAYVWTQGDDGKWKPALVLLRINRAATCVKWSPAENKFAVGSGARLISVCYFESENDWWVSKH 140
Fly 141 IKKPIRSTVTSLDWHPNNVLLLAGSTDYKVRVFSAFIKDIEEPPTPTPWGNRKPLGQLMAEFRNS 205
Fly 206 QTSGGGWINSVSFSSDGNKVCWVGHDSCVSIADATNGNTVIRCRTGYLPFLSCEWVSPTSVVVAG 270
Fly 271 YSCVPLLYSLTADGKLVLSGKLDKSQKKESSGITAMRIFQSMDRNMRTENTDTVVDSIHQNAITS 335
Fly 336 VRLYAGDKASATKVSTSGVDGQLVIWNVE--QGGING 370 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Arpc1 | NP_476596.1 | WD40 | <3..236 | CDD:295369 | 158/224 (71%) |
WD40 | <3..181 | CDD:225201 | 129/169 (76%) | ||
WD40 repeat | 14..53 | CDD:293791 | 28/38 (74%) | ||
WD40 repeat | 59..97 | CDD:293791 | 25/37 (68%) | ||
WD40 repeat | 103..142 | CDD:293791 | 36/38 (95%) | ||
WD40 | 146..>366 | CDD:295369 | 106/221 (48%) | ||
WD40 repeat | 150..203 | CDD:293791 | 35/52 (67%) | ||
WD40 repeat | 213..247 | CDD:293791 | 16/33 (48%) | ||
Arpc1a | NP_112408.1 | WD 1 | 6..45 | 27/36 (75%) | |
WD40 repeat | 11..50 | CDD:293791 | 28/38 (74%) | ||
WD40 | 46..>280 | CDD:421866 | 152/236 (64%) | ||
WD 2 | 50..89 | 23/39 (59%) | |||
WD40 repeat | 56..93 | CDD:293791 | 25/37 (68%) | ||
WD40 repeat | 98..138 | CDD:293791 | 37/39 (95%) | ||
WD 3 | 140..179 | 29/38 (76%) | |||
WD40 repeat | 146..199 | CDD:293791 | 35/52 (67%) | ||
WD 4 | 202..241 | 20/40 (50%) | |||
WD40 repeat | 207..243 | CDD:293791 | 16/35 (46%) | ||
WD 5 | 244..284 | 17/39 (44%) | |||
WD40 repeat | 249..287 | CDD:293791 | 15/37 (41%) | ||
WD 6 | 322..365 | 16/42 (38%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 1 | 0.930 | - | - | C166353870 | |
Domainoid | 1 | 1.000 | 176 | 1.000 | Domainoid score | I3524 |
eggNOG | 1 | 0.900 | - | - | E1_KOG1523 | |
Hieranoid | 1 | 1.000 | - | - | ||
Homologene | 1 | 1.000 | - | - | H4675 | |
Inparanoid | 1 | 1.050 | 441 | 1.000 | Inparanoid score | I1608 |
OMA | 1 | 1.010 | - | - | QHG54320 | |
OrthoDB | 1 | 1.010 | - | - | D317177at33208 | |
OrthoFinder | 1 | 1.000 | - | - | FOG0001692 | |
OrthoInspector | 1 | 1.000 | - | - | otm45242 | |
orthoMCL | 1 | 0.900 | - | - | OOG6_101628 | |
Panther | 1 | 1.100 | - | - | O | PTHR10709 |
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 1 | 1.000 | - | - | X1085 | |
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
15 | 14.810 |