DRSC/TRiP Functional Genomics Resources

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Protein Alignment Arpc1 and Arpc1a

DIOPT Version :9

Sequence 1:NP_476596.1 Gene:Arpc1 / 34793 FlyBaseID:FBgn0001961 Length:377 Species:Drosophila melanogaster
Sequence 2:NP_062741.1 Gene:Arpc1a / 56443 MGIID:1928896 Length:370 Species:Mus musculus


Alignment Length:362 Identity:211/362 - (58%)
Similarity:264/362 - (72%) Gaps:5/362 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 LASITCHAWNKDRTQIALSPNNHEIHIYSREGSDWKLADVLNQHDLRVMGIDWAKNTNRIVSCAA 75
            |..|||||||:|||||||||||||:|||.:.||.|..|..|.:|:..:.|||||..::|||:|.|
Mouse     8 LEPITCHAWNRDRTQIALSPNNHEVHIYKKNGSQWTKAHELKEHNGHITGIDWAPKSDRIVTCGA 72

  Fly    76 DRNAYVWTQGDDGKWKPALVLLRINRAATCVKWSPAENKFAVGSGARLISVCYFESENDWWVSKH 140
            |||||||:| .||.|||.||:||||||||.|||||.|||||||||||||||||||||||||||||
Mouse    73 DRNAYVWSQ-KDGIWKPTLVILRINRAATFVKWSPLENKFAVGSGARLISVCYFESENDWWVSKH 136

  Fly   141 IKKPIRSTVTSLDWHPNNVLLLAGSTDYKVRVFSAFIKDIEEPPTPTPWGNRKPLGQLMAEFRNS 205
            |||||||||.|||||||||||.|||.|:|.|||||:||:::|.|..||||::.|.||||:||..|
Mouse   137 IKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRVFSAYIKEVDEKPASTPWGSKMPFGQLMSEFGGS 201

  Fly   206 QTSGGGWINSVSFSSDGNKVCWVGHDSCVSIADATNGNTVIRCRTGYLPFLSCEWVSPTSVVVAG 270
            .|  |||::.||||:.||::.||.|||.||:|||:....|...||.:||.||..:||..|||.||
Mouse   202 GT--GGWVHGVSFSASGNRLAWVSHDSTVSVADASKSVQVSTLRTEFLPLLSVSFVSENSVVAAG 264

  Fly   271 YSCVPLLYSLTADGKLVLSGKLDKSQKKESSGITAMRIFQSMDRNMRTENTDTVVDSIHQNAITS 335
            :.|.|:|::....|.|....|||..::.....::||..|::||:...||:.:|.::::|||:||.
Mouse   265 HDCCPMLFNYDDRGCLTFVSKLDVPKQSIQRNMSAMERFRNMDKRATTEDRNTALETLHQNSITQ 329

  Fly   336 VRLYAGDKASATKVSTSGVDGQLVIWNVE--QGGING 370
            |.:|..||....|..|:|:||.:.||:.:  :..|.|
Mouse   330 VSIYEVDKQDCRKFCTTGIDGAMTIWDFKTLESSIQG 366

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Arpc1NP_476596.1 WD40 <3..236 CDD:295369 159/224 (71%)
WD40 <3..181 CDD:225201 129/169 (76%)
WD40 repeat 14..53 CDD:293791 28/38 (74%)
WD40 repeat 59..97 CDD:293791 25/37 (68%)
WD40 repeat 103..142 CDD:293791 36/38 (95%)
WD40 146..>366 CDD:295369 107/221 (48%)
WD40 repeat 150..203 CDD:293791 35/52 (67%)
WD40 repeat 213..247 CDD:293791 17/33 (52%)
Arpc1aNP_062741.1 WD40 1..362 CDD:225201 209/356 (59%)
WD 1 6..45 27/36 (75%)
WD40 repeat 11..50 CDD:293791 28/38 (74%)
WD40 46..>280 CDD:295369 153/236 (65%)
WD 2 50..89 23/39 (59%)
WD40 repeat 56..93 CDD:293791 25/37 (68%)
WD40 repeat 98..138 CDD:293791 37/39 (95%)
WD 3 140..179 29/38 (76%)
WD40 repeat 146..199 CDD:293791 35/52 (67%)
WD 4 202..241 21/40 (53%)
WD40 repeat 207..243 CDD:293791 17/35 (49%)
WD 5 244..284 17/39 (44%)
WD40 repeat 249..287 CDD:293791 15/37 (41%)
WD 6 322..365 16/42 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167850177
Domainoid 1 1.000 178 1.000 Domainoid score I3546
eggNOG 1 0.900 - - E1_KOG1523
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H4675
Inparanoid 1 1.050 443 1.000 Inparanoid score I1631
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG54320
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001692
OrthoInspector 1 1.000 - - otm43170
orthoMCL 1 0.900 - - OOG6_101628
Panther 1 1.100 - - O PTHR10709
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R87
SonicParanoid 1 1.000 - - X1085
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1615.790

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