Protein Alignment Arpc1 and arpc1a

DIOPT Version :10

• Sequence 1: NP_476596.1
• Gene: Arpc1 / 34793
• FlyBaseID: FBgn0001961
• Length: 377
• Species: Drosophila melanogaster
• Sequence 2: NP_958500.1
• Gene: arpc1a / 394243
• ZFINID: ZDB-GENE-040116-1
• Length: 370
• Species: Danio rerio
• Alignment Length: 362
• Identity: 202/362 - (55%)
• Similarity: 263/362 - (72%)
• Gaps: 5/362 - (1%)

  Fly    11 LASITCHAWNKDRTQIALSPNNHEIHIYSREGSDWKLADVLNQHDLRVMGIDWAKNTNRIVSCAA 75
            |..|||||||:||||||:||||||:|||.:.|:.|.....|.:|:..:.|||||..::|||:|.|
Zfish     8 LEPITCHAWNRDRTQIAISPNNHEVHIYKKSGNQWVKVHELKEHNGHITGIDWAPKSDRIVTCGA 72

  Fly    76 DRNAYVWTQGDDGKWKPALVLLRINRAATCVKWSPAENKFAVGSGARLISVCYFESENDWWVSKH 140
            |||||||:| .||.|||.||:||||||||.|||||.|||||||||||||||||||||||||||||
Zfish    73 DRNAYVWSQ-KDGVWKPTLVILRINRAATFVKWSPLENKFAVGSGARLISVCYFESENDWWVSKH 136

  Fly   141 IKKPIRSTVTSLDWHPNNVLLLAGSTDYKVRVFSAFIKDIEEPPTPTPWGNRKPLGQLMAEFRNS 205
            |||||||||.|||||||||||.|||.|:|.|||||:||:::|.|.|||||::.|.||:|.||..:
Zfish   137 IKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRVFSAYIKEVDEKPAPTPWGSKMPFGQVMTEFGGA 201

  Fly   206 QTSGGGWINSVSFSSDGNKVCWVGHDSCVSIADATNGNTVIRCRTGYLPFLSCEWVSPTSVVVAG 270
              ..|||::||.||:.||::.||.|||.|::.|.|..:|..:.:|.:|..||..:||..::|.||
Zfish   202 --GSGGWVHSVCFSASGNRLAWVSHDSTVTVVDPTISSTPSQLKTEFLALLSVTFVSENNIVAAG 264

  Fly   271 YSCVPLLYSLTADGKLVLSGKLDKSQKKESSGITAMRIFQSMDRNMRTENTDTVVDSIHQNAITS 335
            :.|.|:|:|....|.|..:.|||..::.....|:||..|::||:...||:.::.::::|||:||.
Zfish   265 HDCCPMLFSFDDGGTLTFTSKLDIPKQSIQRNISAMERFRNMDKRATTEDRNSTLETLHQNSITQ 329

  Fly   336 VRLYAGDKASATKVSTSGVDGQLVIWNVE--QGGING 370
            |.:|.|||....|..|:|:||.:.||:.:  :..|.|
Zfish   330 VSIYEGDKRDCRKFCTTGIDGAMTIWDFKTLESSIQG 366

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Arpc1	NP_476596.1	WD40	<3..236	CDD:475233	154/224 (69%)
		WD40 repeat	14..53	CDD:293791	25/38 (66%)
		WD40 repeat	59..97	CDD:293791	25/37 (68%)
		WD40 repeat	103..142	CDD:293791	36/38 (95%)
		WD40	146..>366	CDD:475233	101/221 (46%)
		WD40 repeat	150..203	CDD:293791	35/52 (67%)
		WD40 repeat	213..247	CDD:293791	15/33 (45%)
arpc1a	NP_958500.1	WD40 repeat	11..50	CDD:293791	25/38 (66%)
		WD40	<15..266	CDD:441893	161/253 (64%)
		WD40 repeat	56..93	CDD:293791	25/37 (68%)
		WD40 repeat	98..138	CDD:293791	37/39 (95%)
		WD40 repeat	146..199	CDD:293791	35/52 (67%)
		WD40 repeat	207..241	CDD:293791	15/33 (45%)
		WD40 repeat	249..320	CDD:293791	24/70 (34%)
		WD40 repeat	327..355	CDD:293791	12/27 (44%)