DRSC/TRiP Functional Genomics Resources

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Protein Alignment Arpc1 and arx-3

DIOPT Version :9

Sequence 1:NP_476596.1 Gene:Arpc1 / 34793 FlyBaseID:FBgn0001961 Length:377 Species:Drosophila melanogaster
Sequence 2:NP_001355516.1 Gene:arx-3 / 3565442 WormBaseID:WBGene00000201 Length:375 Species:Caenorhabditis elegans


Alignment Length:365 Identity:184/365 - (50%)
Similarity:253/365 - (69%) Gaps:15/365 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 YTFGTSLASITCHAWNKDRTQIALSPNNHEIHIYSREGSDWKLADVLNQHDLRVMGIDWAKNTNR 69
            :.||  :..||||||||||||||:|.::::|||:.....||:....|::|||.|.|:||...|||
 Worm    10 WNFG--IGPITCHAWNKDRTQIAVSASSNDIHIFEWRNGDWQSIHTLSEHDLPVTGLDWGTKTNR 72

  Fly    70 IVSCAADRNAYVWTQGDDGKWKPALVLLRINRAATCVKWSPAENKFAVGSGARLISVCYFESEND 134
            ||||:.|:||:||| .|...|||.|||:|.|||||.|||||.||||||||||:|:||||:|.|||
 Worm    73 IVSCSQDKNAFVWT-FDKNVWKPELVLVRFNRAATYVKWSPLENKFAVGSGAKLVSVCYYEKEND 136

  Fly   135 WWVSKHIKKPIRSTVTSLDWHPNNVLLLAGSTDYKVRVFSAFIKDIEEPPTPTPWGNRKPLGQLM 199
            |||||.||||||||||.||||.|||||..||.|:|.|||||::|:::|.|:|.|||.:.|.||||
 Worm   137 WWVSKQIKKPIRSTVTCLDWHSNNVLLAVGSCDFKCRVFSAYVKEVDEKPSPNPWGQKMPFGQLM 201

  Fly   200 AEFRNSQTSGGGWINSVSFSSDGNKVCWVGHDSCVSIADAT-NGNTVIRCRTGYLPFLSCEWVSP 263
            :|:     |.|||::.|:||..|.::.:|.|||.||..|:| :...|....|.:|||.:.||::.
 Worm   202 SEY-----SVGGWVHRVAFSPSGCRLAFVSHDSSVSFVDSTVDSQKVQNLLTIHLPFTTVEWITE 261

  Fly   264 TSVVVAGYSCVPLLYSLTADGKLVLSG--KLD-KSQKKESSGITAMRIFQSMDRNMRTENTDTVV 325
            .|||.||:.|.|:|:.::.|   ||..  ||| .|..|.|:..:|:::|:::|||...|..:..:
 Worm   262 NSVVTAGHDCSPVLFVVSQD---VLKEVCKLDVPSAAKSSTVNSALQLFKNIDRNNAAEKINVAL 323

  Fly   326 DSIHQNAITSVRLYAGDKASATKVSTSGVDGQLVIWNVEQ 365
            .::|||.||.:..::|...:..|.:|.|.||.:.:|::::
 Worm   324 KTLHQNRITQILPHSGTVGNVVKFTTCGTDGIVALWDLKE 363

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Arpc1NP_476596.1 WD40 <3..236 CDD:295369 139/230 (60%)
WD40 <3..181 CDD:225201 114/175 (65%)
WD40 repeat 14..53 CDD:293791 21/38 (55%)
WD40 repeat 59..97 CDD:293791 22/37 (59%)
WD40 repeat 103..142 CDD:293791 31/38 (82%)
WD40 146..>366 CDD:295369 94/224 (42%)
WD40 repeat 150..203 CDD:293791 32/52 (62%)
WD40 repeat 213..247 CDD:293791 13/34 (38%)
arx-3NP_001355516.1 ANAPC4_WD40 <15..67 CDD:315554 27/51 (53%)
WD40 repeat 17..56 CDD:293791 21/38 (55%)
WD40 50..>272 CDD:356469 132/227 (58%)
WD40 repeat 62..100 CDD:293791 23/38 (61%)
WD40 repeat 105..144 CDD:293791 31/38 (82%)
WD40 repeat 152..186 CDD:293791 21/33 (64%)
WD40 repeat 210..247 CDD:293791 13/36 (36%)
WD40 repeat 253..296 CDD:293791 18/45 (40%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160167346
Domainoid 1 1.000 143 1.000 Domainoid score I2897
eggNOG 1 0.900 - - E1_KOG1523
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H4675
Inparanoid 1 1.050 377 1.000 Inparanoid score I1207
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG54320
OrthoDB 1 1.010 - - D317177at33208
OrthoFinder 1 1.000 - - FOG0001692
OrthoInspector 1 1.000 - - oto19165
orthoMCL 1 0.900 - - OOG6_101628
Panther 1 1.100 - - LDO PTHR10709
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R87
SonicParanoid 1 1.000 - - X1085
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1716.800

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