DRSC/TRiP Functional Genomics Resources

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Protein Alignment Arpc1 and LOC100488540

DIOPT Version :10

Sequence 1:NP_476596.1 Gene:Arpc1 / 34793 FlyBaseID:FBgn0001961 Length:377 Species:Drosophila melanogaster
Sequence 2:XP_002943496.2 Gene:LOC100488540 / 100488540 XenbaseID:XB-GENE-29079251 Length:357 Species:Xenopus tropicalis


Alignment Length:360 Identity:184/360 - (51%)
Similarity:257/360 - (71%) Gaps:7/360 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 YTFGTSLASITCHAWNKDRTQIALSPNNHEIHIYSREGSDWKLADVLNQHDLRVMGIDWAKNTNR 69
            |:|||.  .|:|||||:||||:|:||||:.:.||.|..::||....|.:|:.||.|||||..:||
 Frog     4 YSFGTD--PISCHAWNQDRTQVAISPNNNLVQIYQRSDNEWKKIHELTEHNGRVTGIDWAPTSNR 66

  Fly    70 IVSCAADRNAYVWTQGDDGKWKPALVLLRINRAATCVKWSPAENKFAVGSGARLISVCYFESEND 134
            :|:||||||||||:. .||.|||.|||||||||||||||||.|||.|||||:::|||||||.|||
 Frog    67 LVTCAADRNAYVWSL-RDGAWKPTLVLLRINRAATCVKWSPRENKLAVGSGSKIISVCYFEKEND 130

  Fly   135 WWVSKHIKKPIRSTVTSLDWHPNNVLLLAGSTDYKVRVFSAFIKDIEEPPTPTPWGNRKPLGQLM 199
            ||:||||||.|.||:.||.||||||||.|||:|::.||||.::|:|::.|:||.||.:.|.|:|:
 Frog   131 WWLSKHIKKSIGSTILSLAWHPNNVLLAAGSSDFQCRVFSGYVKEIDDKPSPTHWGTKIPFGELL 195

  Fly   200 AEFRNSQTSGGGWINSVSFSSDGNKVCWVGHDSCVSIADATNGNTVIRCRTGYLPFLSCEWVSPT 264
              |::.:.  |||::.|:||..|..:.||.|:||||:||:.....|.|..|.||||||..:|:..
 Frog   196 --FQSGEK--GGWVHGVAFSPSGRYLAWVDHNSCVSVADSAEDKAVTRLSTEYLPFLSLLFVNEC 256

  Fly   265 SVVVAGYSCVPLLYSLTADGKLVLSGKLDKSQKKESSGITAMRIFQSMDRNMRTENTDTVVDSIH 329
            .::.||:.|.|.|:|....|||....|:|..::...:.::||..|:::|:....|:..:.|.::|
 Frog   257 QLLAAGHDCAPYLFSYGGSGKLDFEAKIDVQKETTKTALSAMSHFRNLDKKGAKESERSDVTTLH 321

  Fly   330 QNAITSVRLYAGDKASATKVSTSGVDGQLVIWNVE 364
            ||:|:.:.:..||.:..|..|::|:||.||||:::
 Frog   322 QNSISQLSIVDGDPSDVTAFSSTGIDGALVIWSLK 356

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Arpc1NP_476596.1 WD40 <3..236 CDD:475233 139/230 (60%)
WD40 repeat 14..53 CDD:293791 21/38 (55%)
WD40 repeat 59..97 CDD:293791 25/37 (68%)
WD40 repeat 103..142 CDD:293791 31/38 (82%)
WD40 146..>366 CDD:475233 89/219 (41%)
WD40 repeat 150..203 CDD:293791 28/52 (54%)
WD40 repeat 213..247 CDD:293791 14/33 (42%)
LOC100488540XP_002943496.2 WD40 repeat 11..50 CDD:293791 21/38 (55%)
WD40 <15..264 CDD:441893 147/253 (58%)
WD40 repeat 56..94 CDD:293791 26/38 (68%)
WD40 repeat 99..138 CDD:293791 31/38 (82%)
WD40 repeat 146..198 CDD:293791 29/53 (55%)
WD40 repeat 205..242 CDD:293791 15/36 (42%)

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