DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment tam and polq

DIOPT Version :9

Sequence 1:NP_476821.1 Gene:tam / 34792 FlyBaseID:FBgn0004406 Length:1145 Species:Drosophila melanogaster
Sequence 2:XP_021329106.1 Gene:polq / 566079 ZFINID:ZDB-GENE-040724-232 Length:2579 Species:Danio rerio


Alignment Length:1320 Identity:231/1320 - (17%)
Similarity:420/1320 - (31%) Gaps:475/1320 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    54 NLVKVQMI----SRNLHAQLF----PQAPRSISEQQVASAKVYKDELRRHGVDIESSAP------ 104
            :||::.::    :|.|::..|    ..|...:||.:.|..|....:..|..|| ||...      
Zfish   996 DLVRISLLTAQRARTLYSSGFVTVAELARADVSEVEKALRKAIPFKSSRQAVD-ESEVEAQERKS 1059

  Fly   105 ---------------------VSDVQLKL------------PALRGANIEEHFHNIAKEQVQP-- 134
                                 |::.||.|            ||...|..:....:..|...:|  
Zfish  1060 MRCIWVSGKKALTEREAAQQIVAEAQLLLQKDLALLGVEWSPACLPAKTQPDNSSTVKSNTEPRS 1124

  Fly   135 ------------------YEELLL----------PLVQCEQLPKRPKRWAFHTGWTAY----DPE 167
                              .|:|||          ||...|......|.....:|.::.    |.:
Zfish  1125 MSGGTEHEGDQDLMSNVTEEKLLLENNSDNNSHPPLRPLESTTNSEKTMDVDSGVSSAECQPDKK 1189

  Fly   168 DGTATPVDHPLEKGLVFDVEVCVSEGQAPVLATAVSTKRWYSWVSSKLT---KHRLS-VEKLEPL 228
            ....:.|.|.:.|.:....:.|  :....|.:::.:.:|..|.:::.::   :|.:| |.|...:
Zfish  1190 CELQSSVLHKVLKSINTKDKGC--DNNHTVESSSETLQRRNSCLNTCISGNDQHCVSPVSKRRRM 1252

  Fly   229 DVDTDSERPHYTTDELIPLGTTGPGLVVGHNVSYDRARLK-----------EQYLTEDTGTRFVD 282
            |...|.|.|          ..||..:.:.:.::.||..:.           :..|.:|||.: .|
Zfish  1253 DAAGDEEGP----------TVTGVKMRIANGLATDRKEMPKPEELCRIDQVKMKLNKDTGLK-KD 1306

  Fly   283 TMS---------LHMCV--SGVTSYQRAMLK--------------SKKEPAAEDLGW---LEQSS 319
            :.|         .::||  ||....:.:.:|              .|:|..||..|.   ::|:.
Zfish  1307 SRSCTPLPNGEVTNVCVFSSGKGKKRTSKMKHLNINEDIYHETQTEKEEMVAEIYGKFSNIDQNE 1371

  Fly   320 ----LNSLVEVHRLYCGGDTLSKEPRNIFVEGTLEQVRQSFQSLTNYCASDVEATHRILRVLYPL 380
                :|:.|: :.|.|..:.||..  :::..| :|:...|||..|.        |.::      |
Zfish  1372 GDLHVNTRVK-NDLVCNSEKLSSP--DLYTNG-IEEFGDSFQLDTQ--------TEKM------L 1418

  Fly   381 YAERFPHPASLAGMLEMGSAYLPVNSNWERYIREAQL--------------TYEDLSI------- 424
            :...|.| .::...:........|:|..|:.::::..              .:|.||:       
Zfish  1419 HGHDFSH-RNVEFNVRENKQDNQVDSTSEKVVKQSSFLEKENRVSKEQNKGPFESLSLHDNGWPT 1482

  Fly   425 --EAKYHLG-----------------------------RRAEEACSLLLDDQY-RQNLWLWDEDW 457
              :.||::.                             |...|:...:.|:.: |.:.:|:|..:
Zfish  1483 EAKPKYNISLTDSQLENILNYSNQVPEEEQCANKPAEQRENNESSDHVTDNSFDRSSSFLFDSLY 1547

  Fly   458 ------SVQELKLKQPPKRKPLPTVELKDSGNTPEERRLQAKFQHLYDQQALLPARRPLLPGYPL 516
                  :::|..:.|..|......|::..:|::||                |:|.||..||    
Zfish  1548 DNSILDAMEEAAIDQDNKGDQEAEVKVNSNGSSPE----------------LIPERREALP---- 1592

  Fly   517 WYRKLCRKPPAKRADEILEDDEE--PWSPGASEIS-------TGMQIAPKLLSLCWEGYPLHYER 572
                              .||:|  .|...:..:|       .|.|...|:...| :|..|..|:
Zfish  1593 ------------------TDDQEAIQWGESSFNLSEWGDSLIIGEQYLEKISKAC-DGPRLGAEK 1638

  Fly   573 EQGWGFLVPFRSDSEGVDRLPMEQLLAHCPVPEFARLSASKAESDMAFDMLPGQVEQHLGKREHY 637
                    |..:| :.|..|.:.|...:....|..||::|      :|.:.||.       ::.:
Zfish  1639 --------PSYTD-DIVSELNVSQSNEYQQKVERHRLNSS------SFHISPGM-------QDLF 1681

  Fly   638 KKLSQKQQRL--ETQYQGSGVWCNK-VLDDCCFFLKLP--HKNGPSFRVGNPLSKDFLNKFAENV 697
            .|.|.:...:  .|.:..|.|..|. ||::.....|..  .|.||..    ..|:||:...|:.|
Zfish  1682 DKWSDQFSTVPDATAHSNSLVEPNAVVLEEAVSLTKTKEIEKEGPEV----SRSEDFVTVQAKKV 1742

  Fly   698 LSSG-DPSCQAAARVIDIARMMSYWRNNRDRIMGQMVVWLDSQQLPNEFTGEKCQPIAYGAICPQ 761
            ..|. .|..|....|....:|.:                 .:.|.|...|.::.:      :.|.
Zfish  1743 TPSDLVPPTQVLEPVTPRVKMTT-----------------SAIQSPKNVTKQRSE------LDPN 1784

  Fly   762 VVACGTLTRRAMEPTWMTASNSRPDRLGSELRSMVQAPPGYRLVGADVDSQELWIASVLGDAYAC 826
            :.:|   |:|..:|...|.|                                   .||||...| 
Zfish  1785 IKSC---TQRYHQPCLRTNS-----------------------------------TSVLGAPLA- 1810

  Fly   827 GEHGATPLGWM-TLSGSKSNGSDMHSITAKAVGISRDHAKVINYARIYGAGQLFAETLLRQ---- 886
             :.|.|.|... :|..|.|...:..||    :.::.|.             :|| ||.:.:    
Zfish  1811 -DEGFTRLSQCPSLPASNSCSPETFSI----IDVASDR-------------RLF-ETFVNEWKTK 1856

  Fly   887 --FNPTFSASEAKAKAMKMFSITKG---KRVYRLREEFHDELEDRAYSSYEASRLAIQRNRTLAE 946
              |:...:..:..:.:::..::..|   |....:|.:..|....:.|.......:::        
Zfish  1857 ERFSLAVACEKTDSTSVQPETVIGGKFKKPTTPMRNKRKDGFLLKGYEDLVVIGISV-------- 1913

  Fly   947 VFHRPNWQGGTESAMFNRLEEIATGSQPRTPFLGGRLSRALEADTGPEQEQRFLPTRINWVVQSG 1011
                 :|  |.:.|.|..|::....:..........|...|..:...:|.|..|....:..|   
Zfish  1914 -----SW--GAKDAYFVSLQQELVDTDISASLAPPPLDDTLTVEERLKQIQSCLQKDSSVTV--- 1968

  Fly  1012 AVDFLHLMLVSMRWLMGSHVRFCLSFHDELRYLVKEELSPKAALAMHITNLMTRSF--CVSRIGL 1074
            ..||:||..:   .|:...:....:|.|           ||.|..:..::...|:.  .|:....
Zfish  1969 TYDFIHLYKI---LLLACELAVRGTFED-----------PKIACWLLDSSSKERTLHNMVTSFAT 2019

  Fly  1075 QDLPMSVAFFSSVEVDTVLRKECTMDCKTPSNPHGLRIGYGI----------QPGQSLSVAEAI- 1128
            :|||:.                           .|:..|.|:          |||:..:..|:: 
Zfish  2020 EDLPLL---------------------------EGISAGQGVQSLGIFGEASQPGRYRAAIESVL 2057

  Fly  1129 ------------EKAGGNDV 1136
                        ||.|..||
Zfish  2058 VFRVMTQLNCLLEKDGFLDV 2077

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tamNP_476821.1 DNA_pol_A 398..>440 CDD:295402 10/93 (11%)
TRH <420..539 CDD:283171 26/163 (16%)
DNA_pol_gammaA 705..1107 CDD:176478 63/413 (15%)
polqXP_021329106.1 BRR2 264..1038 CDD:333051 10/41 (24%)
DNA_pol_A_theta 2096..2574 CDD:176475
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0749
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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