DRSC/TRiP Functional Genomics Resources

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Protein Alignment tam and polq-1

DIOPT Version :9

Sequence 1:NP_476821.1 Gene:tam / 34792 FlyBaseID:FBgn0004406 Length:1145 Species:Drosophila melanogaster
Sequence 2:NP_001367994.1 Gene:polq-1 / 175810 WormBaseID:WBGene00020964 Length:1603 Species:Caenorhabditis elegans


Alignment Length:399 Identity:80/399 - (20%)
Similarity:137/399 - (34%) Gaps:117/399 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   705 CQAAARVIDIARMMSYWRNNRDRIMGQMVVWLDSQQLPNEFTGEKC-QPIA--YGAICPQVVACG 766
            |:...|.:...:::....|.:..|:|::   |:.:|:.:..|  :| .|:|  .|.|......| 
 Worm  1290 CKPKLRHLPTNKLILEQMNTQHPIVGKI---LEYRQIQHTLT--QCLMPLAKFIGRIHCWFEMC- 1348

  Fly   767 TLTRRAMEPTWMTASNSRPDRLGSE---LRSMVQAPPGYRLVGADVDSQELWIASVLGDAYACGE 828
            |.|.|.:  |.:....:.|.|:.|:   .|.:..|.....|:|||....||.:.:.|        
 Worm  1349 TSTGRIL--TSVPNLQNVPKRISSDGMSARQLFIANSENLLIGADYKQLELRVLAHL-------- 1403

  Fly   829 HGATPLGWMTLSGSKSNGSDM-HSITA-----KAVGIS----RDHAKVINYARIYGAGQLFAETL 883
                           ||.|:: :.||:     :.:.|.    ||..|.:.|..|||.|......|
 Worm  1404 ---------------SNDSNLVNLITSDRDLFEELSIQWNFPRDAVKQLCYGLIYGMGAKSLSEL 1453

  Fly   884 LRQFNPTFSASEAKAKAMKMFSITKGKRVYRLREEFHDELEDRAYSSYEASRLAIQRNRTLAEVF 948
            .|     .|..:|:......|::..|.|.|                                   
 Worm  1454 TR-----MSIEDAEKMLKAFFAMFPGVRSY----------------------------------- 1478

  Fly   949 HRPNWQGGTESAMFNRLEEIATGSQPRTPFLGGRLSRALEADTGPEQEQRFLPTRINWVVQSGAV 1013
                         .|..:|.....:|.:..:|.|  ..::|....|:..|.....:|:.:|..|.
 Worm  1479 -------------INETKEKVCKEEPISTIIGRR--TIIKASGIGEERARIERVAVNYTIQGSAS 1528

  Fly  1014 DFLHLMLVSMRWLMGSHVR-----FCLSFHDELRYLVKEELSPKAALAMHITNLMTRSFCVSRIG 1073
            :.....:|.:.    |.::     ..|:.|||:  ||:......||.:..|.|.|..:..    .
 Worm  1529 EIFKTAIVDIE----SKIKEFGAQIVLTIHDEV--LVECPEIHVAAASESIENCMQNALS----H 1583

  Fly  1074 LQDLPMSVA 1082
            |..:||.|:
 Worm  1584 LLRVPMRVS 1592

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tamNP_476821.1 DNA_pol_A 398..>440 CDD:295402
TRH <420..539 CDD:283171
DNA_pol_gammaA 705..1107 CDD:176478 80/399 (20%)
polq-1NP_001367994.1 BRR2 12..696 CDD:224125
DNA_pol_A_theta 1230..1602 CDD:176475 80/399 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0749
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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