DRSC/TRiP Functional Genomics Resources

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Protein Alignment PolG1 and mus301

DIOPT Version :10

Sequence 1:NP_476821.1 Gene:PolG1 / 34792 FlyBaseID:FBgn0004406 Length:1145 Species:Drosophila melanogaster
Sequence 2:XP_551895.4 Gene:mus301 / 1280395 VectorBaseID:AGAMI1_008774 Length:1210 Species:Anopheles gambiae


Alignment Length:423 Identity:75/423 - (17%)
Similarity:149/423 - (35%) Gaps:110/423 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    64 NLHAQLFPQAPRSISEQQVASAKVYKDELRRHGVDIESSAPVSDVQLKLPALRGANIEEHFHNIA 128
            :|.|.|....|..::|.:...    |:::.|...:..|.|||      ||......:..|...:.
Mosquito   667 SLCALLANHLPARLAEHRAEE----KEQIIRSLKEDGSIAPV------LPQAFRVGVAYHHAGLT 721

  Fly   129 KEQVQPYEEL----LLPLVQCEQLPKRPKRWAFHTGWTAYDPEDGTATPVDHPLEKGLVFDVEVC 189
            :::.:..|:.    :|.|:.|...                     .|..|:.|.::.::      
Mosquito   722 QDERRTIEDAYRAGILSLIVCTST---------------------LAAGVNLPAKRVII------ 759

  Fly   190 VSEGQAPVLATAVSTKRWYSWVSSKLTKHRLSV---------EKLEPLDVDTDSERPHYTTDELI 245
                ::|.:..        |::|  |::::..|         |..|.:.:....:.|........
Mosquito   760 ----RSPYIGN--------SFLS--LSRYKQMVGRAGRAGFGETGESILICAQRDIPQVCEMLCA 810

  Fly   246 PLGTTGPGLVVGHNVSYDRARLKEQYLTEDTGTRFVDTMSLHMCVS--GVTSYQR-AMLKSKKEP 307
            |:......|:..     |||..|...|:         .:.|.:|.|  .:.:..| .:|..:.|.
Mosquito   811 PMDIAESALIAD-----DRAYFKSLILS---------AIGLDLCESRDALQALVRCTLLAQQAER 861

  Fly   308 AAEDLGWLEQSSLNSLVEVHRLYCGGDTLSKEPRNIFVE-GTLEQVRQSFQSLTNYCASDVEATH 371
            .:.||..:...::..|.:.:.:....|:..:.|.|:.|| ||..:..:|.....:....|..|..
Mosquito   862 RSIDLAAVTDETIVQLYQGNAIKARHDSCLRNPPNMLVEIGTAVEEDRSPTKTGSSAPYDGAAGP 926

  Fly   372 RILRVLYPLYAERFPHPASLAGMLE---------MGSAYLPVNSNWERYIREAQLTYEDLSIEAK 427
            ..:||     .:...||..:...::         :|.|.:....|.|:.:|    .|:::.:   
Mosquito   927 TFVRV-----HKAAAHPGKVIKTIQRTSPLEVNRLGKAAIRAGFNMEKAVR----FYDEMKV--- 979

  Fly   428 YHLGRRAEEACSLLLDDQYRQNLWLWDEDWSVQ 460
              ||   |..|  :||:....:|.|.::...||
Mosquito   980 --LG---ERLC--VLDEYDLLHLILLEDGREVQ 1005

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PolG1NP_476821.1 DNApol_Exo 107..381 CDD:465664 46/290 (16%)
DNA_pol_A 398..>440 CDD:470638 10/41 (24%)
DNA_pol_gammaA 705..1107 CDD:176478
mus301XP_551895.4 None
Blue background indicates that the domain is not in the aligned region.

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