DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment b and GAD1

DIOPT Version :9

Sequence 1:NP_001246025.1 Gene:b / 34791 FlyBaseID:FBgn0000153 Length:575 Species:Drosophila melanogaster
Sequence 2:NP_013976.1 Gene:GAD1 / 855291 SGDID:S000004862 Length:585 Species:Saccharomyces cerevisiae


Alignment Length:567 Identity:104/567 - (18%)
Similarity:188/567 - (33%) Gaps:167/567 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   117 NRSSKVVEWHEPAELRQLFDFQLREQGESQDKLRELLRETI------RFSV-KTGHPYFINQLYS 174
            |.:.|||  |:.|.|:.|.:...:...:|..:....:|:|.      ::|| |.|.|..::    
Yeast    14 NIAGKVV--HDLAGLQLLSNDVQKSAVQSGHQGSNNMRDTSSQGMANKYSVPKKGLPADLS---- 72

  Fly   175 GVDPYALVGQWLTDALNPSVYTYEVAPLFT------LMEE-----------------------QV 210
                |.|:...||...||.:........||      |::|                       .:
Yeast    73 ----YQLIHNELTLDGNPHLNLASFVNTFTTDQARKLIDENLTKNLADNDEYPQLIELTQRCISM 133

  Fly   211 LAEM------RRIVGFPNGGQGDGIFCPGGSIANGYAISCARYRHSPESKKNGLFNAKPLIIFTS 269
            ||::      ...:|....|..:.|...|.::..       |:.|  ..|..|...:||.||.:|
Yeast   134 LAQLWHANPDEEPIGCATTGSSEAIMLGGLAMKK-------RWEH--RMKNAGKDASKPNIIMSS 189

  Fly   270 E--------DAHYSVEKLAMFMGFGSDHVRK-------IATNEVGKMRLSDLEKQVKLCLENGWQ 319
            .        ..::.||...:.:...|.|:..       :..|.:|             |.     
Yeast   190 ACQVALEKFTRYFEVECRLVPVSHRSHHMLDPESLWDYVDENTIG-------------CF----- 236

  Fly   320 PLMVSATAGTTVLGAFDDLAGISEVCK----KYNMW------MHVDAAWGGGAL-MSKKYRHL-L 372
                 ...|||..|..:::..:::|..    |:..|      :|.|.|.||..: ...:..|: .
Yeast   237 -----VILGTTYTGHLENVEKVADVLSQIEAKHPDWSNTDIPIHADGASGGFIIPFGFEKEHMKA 296

  Fly   373 NGIE-------RADSVTWNPHKLLAASQQCSTFLTRHQQVLAQCHSTNATYLFQKDKFYDTSFDT 430
            .|:|       |..|:..:.||....:......|.|.:.:||........||...::.:..:|..
Yeast   297 YGMERWGFNHPRVVSMNTSGHKFGLTTPGLGWVLWRDESLLADELRFKLKYLGGVEETFGLNFSR 361

  Fly   431 GDKHIQCGRRADVFKFWFMWKAKGTQGLEAHVEKVFRMAEFFTAKVRERPGFELVLES--PECTN 493
            ..        ..|...:|.:.:.|..|.....:....:|..|:        |||:..|  |.|..
Yeast   362 PG--------FQVVHQYFNFVSLGHSGYRTQFQNSLFVARAFS--------FELLNSSKLPGCFE 410

  Fly   494 I------------------SFWYVP----PG--LREMERNREFYDRLHKVAPKVKEGMIKKGSMM 534
            |                  .:|..|    ||  |...:.:::|::...:|...:...:::....:
Yeast   411 IVSSIHESIENDSAPKSVKDYWEHPQAYKPGVPLVAFKLSKKFHEEYPEVPQAILSSLLRGRGWI 475

  Fly   535 ITYQPLRQLPN------FFRLVLQNSCLEESDMVYFLDEIESLAQNL 575
            |...||.:..:      ..|:|.::....:...:..:| |||:...|
Yeast   476 IPNYPLPKATDGSDEKEVLRVVFRSEMKLDLAQLLIVD-IESILTKL 521

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bNP_001246025.1 AAT_I 128..499 CDD:302748 83/466 (18%)
GAD1NP_013976.1 Glu-decarb-GAD 41..522 CDD:130848 95/538 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0076
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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