DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment b and hdc

DIOPT Version :9

Sequence 1:NP_001246025.1 Gene:b / 34791 FlyBaseID:FBgn0000153 Length:575 Species:Drosophila melanogaster
Sequence 2:XP_005169965.1 Gene:hdc / 793609 ZFINID:ZDB-GENE-080102-5 Length:608 Species:Danio rerio


Alignment Length:391 Identity:108/391 - (27%)
Similarity:177/391 - (45%) Gaps:39/391 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly   118 RSSKVVEWHEPAELRQLFDFQLREQGES-----QDKLRELLRETIRFSVKTGHPYF--INQLYSG 175
            |..:||...:|..:|.|.......:.|.     ||....::...:.:.....|.||  :|...| 
Zfish    25 RERRVVPDVQPGFMRPLLPSSAPYEPEDWSTIMQDVENIIMPGVVHWQSPHMHAYFPALNSWPS- 88

  Fly   176 VDPYALVGQWLTDALNPSVYTYEVAPLFTLMEEQVLAEMRRIVGFPN-------GGQGDGIFCPG 233
                 |:|..|.||:|...:|:..:|..|.:|..||..:.:.:|.|:       ...|.||....
Zfish    89 -----LLGDMLADAINCLGFTWASSPACTELEMCVLDWLCKALGLPDHYLHHHPQSTGGGILQST 148

  Fly   234 GSIANGYAISCARYRHSPESKK--------NGLFNAKPLIIFTSEDAHYSVEKLAMFMGFGSDHV 290
            .|.....|:..||.....:.|.        ..:.|:: |:.:.|:.||.||||..:   .....:
Zfish   149 VSECTLVALLAARKDRILQMKSEATHTDTDESVLNSR-LVAYASDQAHSSVEKAGL---ISLVKI 209

  Fly   291 RKIATNEVGKMRLSDLEKQVKLCLENGWQPLMVSATAGTTVLGAFDDLAGISEVCKKYNMWMHVD 355
            |.:.|:.|..:|...|::.|:....:|..|:||.||.|:|.:.:||.|..:..||.:..:|:|||
Zfish   210 RFLQTDAVFSLRGETLQRAVEEDRRSGLIPVMVCATLGSTGVCSFDRLDELGPVCVREGLWLHVD 274

  Fly   356 AAWGGGALMSKKYRHLLNGIERADSVTWNPHKLLAASQQCSTFLTRHQQVLAQCHSTNATYLFQK 420
            ||:.|.||:..:.|:.|:||:.|||..:||.|.:.....|:.|..:::..|.|..:.:..||   
Zfish   275 AAYAGSALLCPELRYFLDGIQFADSFVFNPSKWMLVHFDCTAFWVKNKMKLQQTFTVDPLYL--- 336

  Fly   421 DKFYDTSFDTGDKH--IQCGRRADVFKFWFMWKAKGTQGLEAHVEKVFRMAEFFTAKVRERPGFE 483
              .:|.|..|...|  |...||....|.||:.::.|.:.|:.|:.....||:.|.:.||....|:
Zfish   337 --RHDNSNATDFMHWQIPLSRRFRSLKLWFVIRSFGLKKLQEHIRHGVEMAKLFESLVRNDTHFQ 399

  Fly   484 L 484
            :
Zfish   400 I 400

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bNP_001246025.1 AAT_I 128..499 CDD:302748 105/381 (28%)
hdcXP_005169965.1 Pyridoxal_deC 35..414 CDD:278699 105/381 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0076
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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