DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment b and gad2

DIOPT Version :9

Sequence 1:NP_001246025.1 Gene:b / 34791 FlyBaseID:FBgn0000153 Length:575 Species:Drosophila melanogaster
Sequence 2:NP_001017708.2 Gene:gad2 / 550403 ZFINID:ZDB-GENE-030909-9 Length:583 Species:Danio rerio


Alignment Length:544 Identity:231/544 - (42%)
Similarity:343/544 - (63%) Gaps:21/544 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly    36 ATAALVASTSSPADSTSTVAFEQASKMLANAANNNNNNNNNITSTKDDLSS---FVASHPAAEFE 97
            |.|.:.|...|.|:|...               |...|.:..|:...||.|   ..|....|:..
Zfish    57 AQAPVKAEDESTAESCGC---------------NKPCNCSKATACFSDLYSTDLLPALDGDAKTM 106

  Fly    98 GFIRACVDEIIKLAVFQGTNRSSKVVEWHEPAELRQLFDFQLREQGESQDKLRELLRETIRFSVK 162
            .|::..|| |:...:.:..:||:||:::|.|.||.|..:::|.::.|:.|.:....|.|:::::|
Zfish   107 NFLQEVVD-ILLAYIVESFDRSTKVIDFHYPNELLQRNNWELSDEPETLDDILISCRATLKYAIK 170

  Fly   163 TGHPYFINQLYSGVDPYALVGQWLTDALNPSVYTYEVAPLFTLMEEQVLAEMRRIVGFPNGGQGD 227
            |.||.:.|||.:|:|...|...|||...|.:::||||||:|.|:|...|.:||.|:|:.: |.||
Zfish   171 TAHPRYFNQLSTGLDMVGLAADWLTSTANTNMFTYEVAPVFVLLEYVTLKKMREIIGWQD-GHGD 234

  Fly   228 GIFCPGGSIANGYAISCARYRHSPESKKNGLFNAKPLIIFTSEDAHYSVEKLAMFMGFGSDHVRK 292
            |||.|||:|:|.||:..|||:..||.|:.|:.:...|:.||||.:|:|::|.|..:|.|::.|..
Zfish   235 GIFSPGGAISNMYAMLLARYKMFPEVKEKGMSSVPRLVAFTSEHSHFSIKKGAAALGIGTESVIC 299

  Fly   293 IATNEVGKMRLSDLEKQVKLCLENGWQPLMVSATAGTTVLGAFDDLAGISEVCKKYNMWMHVDAA 357
            |..:|.|||..||||:::....:.|:.|..|||||||||.||||.|..|:::|||:::|||||.|
Zfish   300 IKADERGKMIPSDLERRIIEAKQKGYVPFFVSATAGTTVYGAFDPLIAIADICKKHDVWMHVDGA 364

  Fly   358 WGGGALMSKKYRHLLNGIERADSVTWNPHKLLAASQQCSTFLTRHQQVLAQCHSTNATYLFQKDK 422
            |||..|||:|:|..|||:|||:|:||||||::|...|||..|.|.:.::..|:...|.||||:||
Zfish   365 WGGSLLMSRKHRWKLNGVERANSMTWNPHKMMAVPLQCSALLVREEGLMQSCNQMQACYLFQQDK 429

  Fly   423 FYDTSFDTGDKHIQCGRRADVFKFWFMWKAKGTQGLEAHVEKVFRMAEFFTAKVRERPGFELVLE 487
            .||..:|||||.:||||..|:||.|.||:||||.|.||.::|...::|:...|:::|.|:::|.:
Zfish   430 HYDLQYDTGDKALQCGRHVDIFKLWLMWRAKGTIGFEAQIDKCLELSEYLYNKIKDREGYQMVFD 494

  Fly   488 -SPECTNISFWYVPPGLREMERNREFYDRLHKVAPKVKEGMIKKGSMMITYQPLRQLPNFFRLVL 551
             .|:.||:.|||:|||:|.:|...|...|||||||.:|..|::.|:.|::|||.....||||:|:
Zfish   495 GKPQHTNVCFWYLPPGVRYLEDKVERMKRLHKVAPVIKARMMEYGTTMVSYQPQGDKVNFFRMVI 559

  Fly   552 QNSCLEESDMVYFLDEIESLAQNL 575
            .|......|:.:.::|||.|.|:|
Zfish   560 SNPAATFEDIDFLIEEIERLGQDL 583

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bNP_001246025.1 AAT_I 128..499 CDD:302748 174/371 (47%)
gad2NP_001017708.2 Pyridoxal_deC 136..506 CDD:278699 173/370 (47%)
TIM_phosphate_binding 511..>561 CDD:304361 22/49 (45%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0076
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG62386
OrthoDB 1 1.010 - - D162307at33208
OrthoFinder 1 1.000 - - FOG0000667
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X464
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
65.920

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