DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment b and Sgpl1

DIOPT Version :9

Sequence 1:NP_001246025.1 Gene:b / 34791 FlyBaseID:FBgn0000153 Length:575 Species:Drosophila melanogaster
Sequence 2:XP_008771093.2 Gene:Sgpl1 / 286896 RGDID:628599 Length:648 Species:Rattus norvegicus


Alignment Length:552 Identity:107/552 - (19%)
Similarity:179/552 - (32%) Gaps:175/552 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    77 ITSTKDDL----------SSFVASHPAAEFEGFIRACVDEIIKLAVFQGTNRSSKVVEWHEPAEL 131
            :|..|.||          ..:|.:.||   :|...|.|.|.:|       ..||..|.|.|....
  Rat   172 LTKAKKDLVKNMPFLKLDKDYVKTLPA---QGLSTAEVLERLK-------EYSSMDVFWQEGKAS 226

  Fly   132 RQLFDFQLREQGESQDKLRELLRETIRFSVKTGHPYFINQLYSGVDPYALVGQ--WLTDALNPSV 194
            ..::        ..:.||.|||                      |..|   |:  | ::.|:|.:
  Rat   227 GAVY--------SGEPKLTELL----------------------VQAY---GEFTW-SNPLHPDI 257

  Fly   195 YTYEVAPLFTLMEEQVLAEMRRIVGFPNGGQGD-GIFCPGGSIANGYAISCARYRHSPESKKNGL 258
            :     |....:|.::   :|......|||... |....||:  ....::|..||.....|    
  Rat   258 F-----PGLRKLEAEI---VRMTCSLFNGGPDSCGCVTSGGT--ESILMACKAYRDLALEK---- 308

  Fly   259 FNAKPLIIFTSEDAHYSVEKLAMFMGFGSDHVRKIATNEVGKMRLSDLEKQVKLCLENGWQPLMV 323
             ..|...|...|.||.:.:|.|.:.|.....|.:....||      |:....:....|   ..|:
  Rat   309 -GIKTPEIVAPESAHAAFDKAAHYFGMKIVRVAQKKNMEV------DVRAMKRAISRN---TAML 363

  Fly   324 SATAGTTVLGAFDDLAGISEVCKKYNMWMHVDAAWGG---------GALMSKKYRHLLNGIERAD 379
            ..:|.....|..|.:..::::..||.:..||||..||         |..:.|.:...:.|:   .
  Rat   364 VCSAPQFPHGVIDPIPEVAKLAVKYKIPFHVDACLGGFLIVFMEKAGYPLEKPFDFRVKGV---T 425

  Fly   380 SVTWNPHKLLAASQQCSTFLTRHQQ-----------------------------VLAQC-----H 410
            |::.:.||...|.:..|..:..:::                             ::|.|     |
  Rat   426 SISADTHKYGYAPKGSSVVMYSNEKYRKYQFFVDADWQGGIYASPSIAGSRPGGIIAACWAALMH 490

  Fly   411 STNATYLFQKDKFYDTS-------------FDTGDKHIQC----GRRADVFKFWFMWKAKG---- 454
            .....|:....:...|:             |..||..:..    ....|:::...|..|||    
  Rat   491 FGENGYVEATKQIIKTARFLKSELENIKNIFILGDPQLSVIALGSNDFDIYRLSNMMSAKGWNFN 555

  Fly   455 ----TQGLE-----AHVEKVFRMAEFFTAKVRERPGFELVLESPEC--TNISFWYVPPGLREMER 508
                .:.:.     .|..|  |:|..|...:||  ....::::|:.  |.:...|   |:.:...
  Rat   556 YLQFPRSIHFCITLVHTRK--RVAIQFLKDIRE--SVTQIMKNPKAKTTGMGAIY---GMAQATI 613

  Fly   509 NRE--------FYDRLHKVAPKVKEGMIKKGS 532
            :|:        |.|.|:...| |.:|....||
  Rat   614 DRKMVAEISSVFLDSLYSTDP-VTQGNQMNGS 644

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bNP_001246025.1 AAT_I 128..499 CDD:302748 79/448 (18%)
Sgpl1XP_008771093.2 DOPA_deC_like 226..587 CDD:99743 77/425 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0076
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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