DRSC/TRiP Functional Genomics Resources

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Protein Alignment b and Gad1

DIOPT Version :10

Sequence 1:NP_476788.1 Gene:b / 34791 FlyBaseID:FBgn0000153 Length:575 Species:Drosophila melanogaster
Sequence 2:NP_058703.1 Gene:Gad1 / 24379 RGDID:2652 Length:593 Species:Rattus norvegicus


Alignment Length:545 Identity:245/545 - (44%)
Similarity:353/545 - (64%) Gaps:17/545 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly    44 TSSPADSTSTV-AF--EQASKMLANAANNNNNNNNNITSTKDDLSSFVASH--PAAEFE----GF 99
            |:|..:.:..| ||  .||||.|.:.  .|::.......|:.|.|:..|..  ||...|    .|
  Rat    53 TNSLEEKSRLVSAFRERQASKNLLSC--ENSDPGARFRRTETDFSNLFAQDLLPAKNGEEQTVQF 115

  Fly   100 IRACVDEIIKLAVFQGTNRSSKVVEWHEPAEL---RQLFDFQLREQGESQDKLRELLRETIRFSV 161
            :...||.::.. |.:..:||:||:::|.|.:|   .:.|:.:|.:..||.:::....|:|:::.|
  Rat   116 LLEVVDILLNY-VRKTFDRSTKVLDFHHPHQLLEGMEGFNLELSDHPESLEQILVDCRDTLKYGV 179

  Fly   162 KTGHPYFINQLYSGVDPYALVGQWLTDALNPSVYTYEVAPLFTLMEEQVLAEMRRIVGFPNGGQG 226
            :||||.|.|||.:|:|...|.|:|||...|.:::|||:||:|.|||:..|.:||.|:|:.| ..|
  Rat   180 RTGHPRFFNQLSTGLDIIGLAGEWLTSTANTNMFTYEIAPVFVLMEQITLKKMREIIGWSN-KDG 243

  Fly   227 DGIFCPGGSIANGYAISCARYRHSPESKKNGLFNAKPLIIFTSEDAHYSVEKLAMFMGFGSDHVR 291
            ||||.|||:|:|.|:|..|||::.||.|..|:.....|::||||.:|||::|....:|||:|:|.
  Rat   244 DGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEHSHYSIKKAGAALGFGTDNVI 308

  Fly   292 KIATNEVGKMRLSDLEKQVKLCLENGWQPLMVSATAGTTVLGAFDDLAGISEVCKKYNMWMHVDA 356
            .|..||.||:..:|||.::....:.|:.||.|:|||||||.||||.:..|:::|:|||:|:||||
  Rat   309 LIKCNERGKIIPADLEAKILDAKQKGFVPLYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDA 373

  Fly   357 AWGGGALMSKKYRHLLNGIERADSVTWNPHKLLAASQQCSTFLTRHQQVLAQCHSTNATYLFQKD 421
            |||||.|||:|:||.|:|||||:||||||||::....|||..|.:.:.:|..|:...|.||||.|
  Rat   374 AWGGGLLMSRKHRHKLSGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMCAGYLFQPD 438

  Fly   422 KFYDTSFDTGDKHIQCGRRADVFKFWFMWKAKGTQGLEAHVEKVFRMAEFFTAKVRERPGFELVL 486
            |.||.|:|||||.|||||..|:||||.|||||||.|.|..:.|...:||:..||::.|..||:|.
  Rat   439 KQYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVF 503

  Fly   487 E-SPECTNISFWYVPPGLREMERNREFYDRLHKVAPKVKEGMIKKGSMMITYQPLRQLPNFFRLV 550
            . .||.||:.|||:|..||.:..:.|..::||:||||:|..|::.|:.|:.|||.....||||:|
  Rat   504 NGEPEHTNVCFWYIPQSLRGVPDSPERREKLHRVAPKIKALMMESGTTMVGYQPQGDKANFFRMV 568

  Fly   551 LQNSCLEESDMVYFLDEIESLAQNL 575
            :.|....:||:.:.::|||.|.|:|
  Rat   569 ISNPAATQSDIDFLIEEIERLGQDL 593

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bNP_476788.1 GadA 127..573 CDD:439846 216/449 (48%)
Gad1NP_058703.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..22
Pyridoxal_deC 143..517 CDD:395219 186/374 (50%)
Blue background indicates that the domain is not in the aligned region.

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