DRSC/TRiP Functional Genomics Resources

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Protein Alignment b and hdl-2

DIOPT Version :9

Sequence 1:NP_001246025.1 Gene:b / 34791 FlyBaseID:FBgn0000153 Length:575 Species:Drosophila melanogaster
Sequence 2:NP_501539.3 Gene:hdl-2 / 182464 WormBaseID:WBGene00006409 Length:611 Species:Caenorhabditis elegans


Alignment Length:409 Identity:78/409 - (19%)
Similarity:149/409 - (36%) Gaps:108/409 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    99 FIRACVDEIIKLAVFQGTNRSSKVVEWHEPAELRQLFDFQLREQGESQDKLRELLRETIRFSV-- 161
            ||....||..|..|....:.:|..:....|               |..::|.|:|::.....:  
 Worm   129 FINDYFDESHKQPVIPENDVNSSRIHVKVP---------------EKAEELTEILKDLKEIVIPN 178

  Fly   162 --KTGHPYFINQLYSGVDPYALVGQWLTDALNPSVYTYEVAPLFTLMEEQVLAEMRRIVGFPN-- 222
              .|.||.: :..::|.....||...::.||...|.:   :|:...:|..:...:...:..|.  
 Worm   179 ICHTHHPRY-HAKFAGKSLADLVASTISAALGHDVNS---SPIIESIERIICKWLSTSMAIPQIK 239

  Fly   223 ---GGQGDGIFCPGGSIANGYAISCARY----RHSPE------SKKNGLFNAKPLIIFTSEDAHY 274
               |...|    |.|::   :...|..:    ||:.|      |.|....|| ..|::.|:|:..
 Worm   240 SSLGELRD----PIGTV---FYTPCDVFISVIRHAIEKFEKTDSGKERSKNA-DYIVYCSDDSQV 296

  Fly   275 SVEKLAMFMGFGSDHVRKIATNEV--GKMRLSDLEKQVKLCLENGWQPLMVSATAGTTVLGAFDD 337
            .:::..:....   .:||:.|:|.  ..|..::|.||::..:..|:.||::.|..|:..:.|.|:
 Worm   297 PLKEPCISCRV---KLRKVITDEKNGSGMTSANLLKQMEKDIARGFTPLVIIANYGSANIAANDE 358

  Fly   338 LAGISEVCKKYNMWMHVDAAWGGGALMSKKYRH----LLNGIERAD-------------SVTWNP 385
            :..:..|.:...:|:|:||::.|...:....|:    |::.:....             ||.|:.
 Worm   359 IWDLVTVSRSKKIWLHLDASYAGCEWLDSNSRNNVHALISEVHSVHITCSSLFPYSGRISVVWSC 423

  Fly   386 HKL-----------------------------------LAASQQCSTFLTRHQQVLAQCHSTN-- 413
            .||                                   :......|..::.|.| |.:.|.||  
 Worm   424 EKLELDGAKILYGEHPIRLWILIRLHGIRSIREAVKRKIILGNAFSERMSHHSQ-LFEMHHTNEH 487

  Fly   414 --ATYLFQKDKFYDTSFDT 430
              ..:.::..|..|.:.||
 Worm   488 GVTVFQYKNKKIKDRTEDT 506

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bNP_001246025.1 AAT_I 128..499 CDD:302748 71/380 (19%)
hdl-2NP_501539.3 AAT_I 125..527 CDD:302748 78/409 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0076
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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