DRSC/TRiP Functional Genomics Resources

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Protein Alignment b and hdl-1

DIOPT Version :9

Sequence 1:NP_001246025.1 Gene:b / 34791 FlyBaseID:FBgn0000153 Length:575 Species:Drosophila melanogaster
Sequence 2:NP_502265.2 Gene:hdl-1 / 178129 WormBaseID:WBGene00001839 Length:905 Species:Caenorhabditis elegans


Alignment Length:655 Identity:137/655 - (20%)
Similarity:243/655 - (37%) Gaps:142/655 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 HFKESIFK--PYSTTSGDDLASVSPLTATAALVASTSSPADSTSTVAFEQASKMLANAANNNNNN 73
            :|.|:..:  |:.|...|.|   :|:..|         |..:      |:..||..|.:......
 Worm   232 YFSETKSRQAPFRTPEADYL---NPIIKT---------PPHN------ERVPKMKTNISKTRKKK 278

  Fly    74 NNNITSTKDDLSS---------------------------FVASHPAAEFE--GFIRACVDEIIK 109
            .....::||...|                           |.......||:  ..::..|| :..
 Worm   279 GKVSDASKDSRPSETKKETLMMPEIHHTKHFDSIGGEEQAFAKKEKVEEFKPTEAVKEEVD-VNG 342

  Fly   110 LAVFQGTNRSSKVVEW----------------HEPAELRQLFDFQLREQGESQDKLRELLRETIR 158
            ::..|..|.:.|||::                .:|..|:.|...:..::.|..|.:.|...:.|.
 Worm   343 MSRDQFRNAAKKVVDYLMKQDESIRAARCSPALKPGYLKALLPPKAPQKAEDIDDILEDYHKLIV 407

  Fly   159 FSVK-TGHPYFINQLYSGVDPY-----ALVGQWLTDA-----LNPSVYTYEVAPLFTLMEEQVLA 212
            ..:. :.||.| :..|...:.:     .|:|..:.||     .||::...||..:..|.|  ::|
 Worm   408 PGLSHSSHPNF-HSFYPAGNSFHCLLADLLGGHIGDAGFYWTSNPALTELEVLMMDWLGE--MMA 469

  Fly   213 EMRRIVGFPNGGQGDGIFCPGGSIANGYAISCA------RYRHSPESKKNGLFNAKPLIIFTSED 271
            ..:..:.||...:|.|......:.:|...:..|      |.:...:..::....|: |:.:||.|
 Worm   470 LPKEFLLFPEASRGGGCMQRSDTESNFLVLVAARTDMIRRMKQRDKRLRSSDILAR-LVAYTSSD 533

  Fly   272 AHYSVEKLAMFMGFGSDHVRKIATNEVGKMRLSDLEKQVKLCLENGWQPLMVSATAGTTVLGAFD 336
            |..|: |:.|........:|.:.|::...:|...|...:...:|.|..|..|.|..||:...:||
 Worm   534 ARRSI-KMKMAAEVAMVKMRVLPTDQNFILRGDTLHAAIMADIERGLIPFFVGANFGTSGPCSFD 597

  Fly   337 DLAGISEVCKKYNMWMHVDAAWGGGALMSKKYRHLLNGIERADSVTWNPHKLLAASQQCSTFLTR 401
            .|..:..||:::..|:|||||:.|.||:..:.|.|:.||:.|||....|.||:.|.........|
 Worm   598 HLHELGPVCREHGTWLHVDAAYAGTALICPEIRGLMRGIDWADSFCTTPSKLIIAVCDVCCLWVR 662

  Fly   402 HQQVLAQCHSTNATYLFQKDKFYDTSFDTGDKHIQCGRRADVFKFWFMWKAKGTQGLEAHVEKVF 466
            .:..|......|..         |..|    |.:...:|....|.|||.::.|.:.|:..:.:..
 Worm   663 DRHKLQHASLENHP---------DLPF----KGLPTSQRVGALKIWFMIRSFGVENLQNQIREHI 714

  Fly   467 RMAEFFTAKVRERPGFE-----------------------LVLESPECTNISFWYVPPGLREMER 508
            |:.:..|..:::...||                       |:....|..|:|       |.....
 Worm   715 RLGQVMTKILQKDLRFEVCNKVVMGLICFRAKSNDMFNKALLYRCNETGNVS-------LASCVL 772

  Fly   509 NREFYDRLHKVAPKVKEGMIKKGSMMI--TYQPLRQLPNFFRLVLQNSCLEESDMVYFLDE---I 568
            ..:|..|:...:||..|..:.....:|  .|..|:  |..:|:.:.|    ::::..|:.:   |
 Worm   773 QNKFVIRMCINSPKCSEEDLDSAYKLICNEYDILK--PFQYRIEVMN----QAELETFIRDPAKI 831

  Fly   569 ESLAQ 573
            .|.|:
 Worm   832 HSSAE 836

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bNP_001246025.1 AAT_I 128..499 CDD:302748 95/410 (23%)
hdl-1NP_502265.2 Pyridoxal_deC 377..746 CDD:278699 91/386 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0076
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.900

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