DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment b and Gad2

DIOPT Version :10

Sequence 1:NP_476788.1 Gene:b / 34791 FlyBaseID:FBgn0000153 Length:575 Species:Drosophila melanogaster
Sequence 2:NP_032104.2 Gene:Gad2 / 14417 MGIID:95634 Length:585 Species:Mus musculus


Alignment Length:547 Identity:236/547 - (43%)
Similarity:353/547 - (64%) Gaps:16/547 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly    38 AALVASTSSPADSTSTVAFEQASKMLANAANNNNNNNNNITSTKDDLSSFVASH-----PAAEFE 97
            |.|...:..||:...:|....|:..:|...:....|     ..|.|: ::...|     ||.:.|
Mouse    46 ALLYGDSGKPAEGGGSVTSRAATGKVACTCDQKPCN-----CPKGDV-NYAFLHATDLLPACDGE 104

  Fly    98 GFIRACVDEIIKLA---VFQGTNRSSKVVEWHEPAELRQLFDFQLREQGESQDKLRELLRETIRF 159
            ....|.:.:::.:.   |.:..:||:||:::|.|.||.|.::::|.:|.::.:::....:.|:::
Mouse   105 RPTLAFLQDVMNILLQYVVKSFDRSTKVIDFHYPNELLQEYNWELADQPQNLEEILTHCQTTLKY 169

  Fly   160 SVKTGHPYFINQLYSGVDPYALVGQWLTDALNPSVYTYEVAPLFTLMEEQVLAEMRRIVGFPNGG 224
            ::|||||.:.|||.:|:|...|...|||...|.:::|||:||:|.|:|...|.:||.|:|:| ||
Mouse   170 AIKTGHPRYFNQLSTGLDMVGLAADWLTSTANTNMFTYEIAPVFVLLEYVTLKKMREIIGWP-GG 233

  Fly   225 QGDGIFCPGGSIANGYAISCARYRHSPESKKNGLFNAKPLIIFTSEDAHYSVEKLAMFMGFGSDH 289
            .|||||.|||:|:|.||:..|||:..||.|:.|:.....||.||||.:|:|::|.|..:|.|:|.
Mouse   234 SGDGIFSPGGAISNMYAMLIARYKMFPEVKEKGMAAVPRLIAFTSEHSHFSLKKGAAALGIGTDS 298

  Fly   290 VRKIATNEVGKMRLSDLEKQVKLCLENGWQPLMVSATAGTTVLGAFDDLAGISEVCKKYNMWMHV 354
            |..|..:|.|||..||||:::....:.|:.|.:|||||||||.||||.|..::::||||.:||||
Mouse   299 VILIKCDERGKMIPSDLERRILEVKQKGFVPFLVSATAGTTVYGAFDPLLAVADICKKYKIWMHV 363

  Fly   355 DAAWGGGALMSKKYRHLLNGIERADSVTWNPHKLLAASQQCSTFLTRHQQVLAQCHSTNATYLFQ 419
            |||||||.|||:|::..|:|:|||:||||||||::....|||..|.|.:.::..|:..:|:||||
Mouse   364 DAAWGGGLLMSRKHKWKLSGVERANSVTWNPHKMMGVPLQCSALLVREEGLMQSCNQMHASYLFQ 428

  Fly   420 KDKFYDTSFDTGDKHIQCGRRADVFKFWFMWKAKGTQGLEAHVEKVFRMAEFFTAKVRERPGFEL 484
            :||.||.|:|||||.:||||..||||.|.||:||||.|.|||::|...:||:....::.|.|:|:
Mouse   429 QDKHYDLSYDTGDKALQCGRHVDVFKLWLMWRAKGTTGFEAHIDKCLELAEYLYTIIKNREGYEM 493

  Fly   485 VLE-SPECTNISFWYVPPGLREMERNREFYDRLHKVAPKVKEGMIKKGSMMITYQPLRQLPNFFR 548
            |.: .|:.||:.||:|||.||.:|.|.|...||.||||.:|..|::.|:.|::||||....||||
Mouse   494 VFDGKPQHTNVCFWFVPPSLRTLEDNEERMSRLSKVAPVIKARMMEYGTTMVSYQPLGDKVNFFR 558

  Fly   549 LVLQNSCLEESDMVYFLDEIESLAQNL 575
            :|:.|......|:.:.::|||.|.|:|
Mouse   559 MVISNPAATHQDIDFLIEEIERLGQDL 585

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bNP_476788.1 GadA 127..573 CDD:439846 213/446 (48%)
Gad2NP_032104.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..24
Pyridoxal_deC 138..509 CDD:395219 180/371 (49%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.