DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment b and Gad2

DIOPT Version :9

Sequence 1:NP_001246025.1 Gene:b / 34791 FlyBaseID:FBgn0000153 Length:575 Species:Drosophila melanogaster
Sequence 2:NP_032104.2 Gene:Gad2 / 14417 MGIID:95634 Length:585 Species:Mus musculus


Alignment Length:547 Identity:236/547 - (43%)
Similarity:353/547 - (64%) Gaps:16/547 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly    38 AALVASTSSPADSTSTVAFEQASKMLANAANNNNNNNNNITSTKDDLSSFVASH-----PAAEFE 97
            |.|...:..||:...:|....|:..:|...:....|     ..|.|: ::...|     ||.:.|
Mouse    46 ALLYGDSGKPAEGGGSVTSRAATGKVACTCDQKPCN-----CPKGDV-NYAFLHATDLLPACDGE 104

  Fly    98 GFIRACVDEIIKLA---VFQGTNRSSKVVEWHEPAELRQLFDFQLREQGESQDKLRELLRETIRF 159
            ....|.:.:::.:.   |.:..:||:||:::|.|.||.|.::::|.:|.::.:::....:.|:::
Mouse   105 RPTLAFLQDVMNILLQYVVKSFDRSTKVIDFHYPNELLQEYNWELADQPQNLEEILTHCQTTLKY 169

  Fly   160 SVKTGHPYFINQLYSGVDPYALVGQWLTDALNPSVYTYEVAPLFTLMEEQVLAEMRRIVGFPNGG 224
            ::|||||.:.|||.:|:|...|...|||...|.:::|||:||:|.|:|...|.:||.|:|:| ||
Mouse   170 AIKTGHPRYFNQLSTGLDMVGLAADWLTSTANTNMFTYEIAPVFVLLEYVTLKKMREIIGWP-GG 233

  Fly   225 QGDGIFCPGGSIANGYAISCARYRHSPESKKNGLFNAKPLIIFTSEDAHYSVEKLAMFMGFGSDH 289
            .|||||.|||:|:|.||:..|||:..||.|:.|:.....||.||||.:|:|::|.|..:|.|:|.
Mouse   234 SGDGIFSPGGAISNMYAMLIARYKMFPEVKEKGMAAVPRLIAFTSEHSHFSLKKGAAALGIGTDS 298

  Fly   290 VRKIATNEVGKMRLSDLEKQVKLCLENGWQPLMVSATAGTTVLGAFDDLAGISEVCKKYNMWMHV 354
            |..|..:|.|||..||||:::....:.|:.|.:|||||||||.||||.|..::::||||.:||||
Mouse   299 VILIKCDERGKMIPSDLERRILEVKQKGFVPFLVSATAGTTVYGAFDPLLAVADICKKYKIWMHV 363

  Fly   355 DAAWGGGALMSKKYRHLLNGIERADSVTWNPHKLLAASQQCSTFLTRHQQVLAQCHSTNATYLFQ 419
            |||||||.|||:|::..|:|:|||:||||||||::....|||..|.|.:.::..|:..:|:||||
Mouse   364 DAAWGGGLLMSRKHKWKLSGVERANSVTWNPHKMMGVPLQCSALLVREEGLMQSCNQMHASYLFQ 428

  Fly   420 KDKFYDTSFDTGDKHIQCGRRADVFKFWFMWKAKGTQGLEAHVEKVFRMAEFFTAKVRERPGFEL 484
            :||.||.|:|||||.:||||..||||.|.||:||||.|.|||::|...:||:....::.|.|:|:
Mouse   429 QDKHYDLSYDTGDKALQCGRHVDVFKLWLMWRAKGTTGFEAHIDKCLELAEYLYTIIKNREGYEM 493

  Fly   485 VLE-SPECTNISFWYVPPGLREMERNREFYDRLHKVAPKVKEGMIKKGSMMITYQPLRQLPNFFR 548
            |.: .|:.||:.||:|||.||.:|.|.|...||.||||.:|..|::.|:.|::||||....||||
Mouse   494 VFDGKPQHTNVCFWFVPPSLRTLEDNEERMSRLSKVAPVIKARMMEYGTTMVSYQPLGDKVNFFR 558

  Fly   549 LVLQNSCLEESDMVYFLDEIESLAQNL 575
            :|:.|......|:.:.::|||.|.|:|
Mouse   559 MVISNPAATHQDIDFLIEEIERLGQDL 585

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bNP_001246025.1 AAT_I 128..499 CDD:302748 180/371 (49%)
Gad2NP_032104.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..24
Pyridoxal_deC 138..509 CDD:278699 180/371 (49%)
Substrate binding. /evidence=ECO:0000250 181..183 1/1 (100%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0076
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG62386
OrthoDB 1 1.010 - - D162307at33208
OrthoFinder 1 1.000 - - FOG0000667
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X464
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
65.920

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