DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment b and gad1.1

DIOPT Version :9

Sequence 1:NP_001246025.1 Gene:b / 34791 FlyBaseID:FBgn0000153 Length:575 Species:Drosophila melanogaster
Sequence 2:XP_004917766.1 Gene:gad1.1 / 100496528 XenbaseID:XB-GENE-1011699 Length:590 Species:Xenopus tropicalis


Alignment Length:527 Identity:241/527 - (45%)
Similarity:346/527 - (65%) Gaps:12/527 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly    58 QASKMLANAANNNNNNNNNITSTKDDLSSFVASH--PAAEFEGFIRACVDEIIKLA---VFQGTN 117
            ||||.|  ....|...::.....:.|.|:..|..  ||...|.|....:.|::.:.   |.:..:
 Frog    67 QASKNL--LVCENIEKDSQFRRAETDFSNLFARDLLPAKNGEEFTMQFLLEVVDILLNYVRKTFD 129

  Fly   118 RSSKVVEWHEPAELR---QLFDFQLREQGESQDKLRELLRETIRFSVKTGHPYFINQLYSGVDPY 179
            ||:||:::|.|.:|.   :.|:.:|.:..||.:::....|:|:::.|:||||.|.|||.:|:|..
 Frog   130 RSTKVLDFHHPHQLLEGIEGFNLELSDNPESLEQILVDCRDTLKYGVRTGHPRFFNQLSTGLDII 194

  Fly   180 ALVGQWLTDALNPSVYTYEVAPLFTLMEEQVLAEMRRIVGFPNGGQGDGIFCPGGSIANGYAISC 244
            .|.|:|||...|.:::|||:||:|.|||:..|.:||.|:|:.. ..|||||.|||:|:|.|:|..
 Frog   195 GLAGEWLTSTANTNMFTYEIAPVFVLMEQITLRKMREIIGWTE-KDGDGIFSPGGAISNMYSIMA 258

  Fly   245 ARYRHSPESKKNGLFNAKPLIIFTSEDAHYSVEKLAMFMGFGSDHVRKIATNEVGKMRLSDLEKQ 309
            |||::.||.|..|:.....|::||||.:|||::|....:||||::|..:.|||.||:..:|||.:
 Frog   259 ARYKYFPEVKTKGMAAVPRLVLFTSEHSHYSIKKTGAALGFGSENVIMVKTNERGKIIPADLEAK 323

  Fly   310 VKLCLENGWQPLMVSATAGTTVLGAFDDLAGISEVCKKYNMWMHVDAAWGGGALMSKKYRHLLNG 374
            :....:.|:.||.|:|||||||.||||.::.|:::|:|||:|:|||||||||.|||:::||.|:|
 Frog   324 ILEAKQKGYVPLYVNATAGTTVYGAFDPISEIADICEKYNLWLHVDAAWGGGLLMSRRHRHKLDG 388

  Fly   375 IERADSVTWNPHKLLAASQQCSTFLTRHQQVLAQCHSTNATYLFQKDKFYDTSFDTGDKHIQCGR 439
            ||||:||||||||::....|||..|.|.:.:|..|:...|.||||:||.||.|:|||||.|||||
 Frog   389 IERANSVTWNPHKMMGVLLQCSAILLREKGILQGCNQMCAGYLFQQDKQYDISYDTGDKAIQCGR 453

  Fly   440 RADVFKFWFMWKAKGTQGLEAHVEKVFRMAEFFTAKVRERPGFELVLES-PECTNISFWYVPPGL 503
            ..|:||||.|||||||.|.||.:.|...:||:..:|:..|.|||:|... ||.||:.|||:||.|
 Frog   454 HVDIFKFWLMWKAKGTVGFEAQINKCLELAEYLYSKIYNREGFEMVFNGVPEHTNVCFWYIPPSL 518

  Fly   504 REMERNREFYDRLHKVAPKVKEGMIKKGSMMITYQPLRQLPNFFRLVLQNSCLEESDMVYFLDEI 568
            |.|..|.|..::||:||||:|..|::.|:.|:.|||.....||||:|:.|....:||:.:.::||
 Frog   519 RGMPNNEEKQEKLHRVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATKSDIDFLVEEI 583

  Fly   569 ESLAQNL 575
            |.|.|.|
 Frog   584 ERLGQEL 590

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bNP_001246025.1 AAT_I 128..499 CDD:302748 186/374 (50%)
gad1.1XP_004917766.1 Pyridoxal_deC 140..514 CDD:395219 186/374 (50%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D162307at33208
OrthoFinder 1 1.000 - - FOG0000667
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X464
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
33.010

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