DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment b and gad1a

DIOPT Version :9

Sequence 1:NP_001246025.1 Gene:b / 34791 FlyBaseID:FBgn0000153 Length:575 Species:Drosophila melanogaster
Sequence 2:XP_002663350.1 Gene:gad1a / 100329827 ZFINID:ZDB-GENE-070912-472 Length:591 Species:Danio rerio


Alignment Length:515 Identity:234/515 - (45%)
Similarity:351/515 - (68%) Gaps:10/515 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly    70 NNNNNNNITSTKDDLSSFVASH--PAAEFEGFIRACVDEIIKLA---VFQGTNRSSKVVEWHEPA 129
            :|..::....|:.|.|:..|..  ||...|.:....:.|::::.   |.:..:||:||:::|.|.
Zfish    78 DNERDSRFRRTETDFSNLYARDLLPAKNGEEYTMQFLLEVVEILTNYVRKTFDRSTKVLDFHHPH 142

  Fly   130 EL---RQLFDFQLREQGESQDKLRELLRETIRFSVKTGHPYFINQLYSGVDPYALVGQWLTDALN 191
            :|   .:.|:.:|.:|.||.:::....|:|:::.|:||||.|.|||.||:|...|.|:|||...|
Zfish   143 QLLEGMEGFNLELCDQPESLEQILVDCRDTLKYGVRTGHPRFFNQLSSGLDIIGLAGEWLTSTAN 207

  Fly   192 PSVYTYEVAPLFTLMEEQVLAEMRRIVGFPNGGQGDGIFCPGGSIANGYAISCARYRHSPESKKN 256
            .:::|||:||:|.|||:..|.:||.|||:|| |:|||||.|||:|:|.|::..|||:|.||.|..
Zfish   208 TNMFTYEIAPVFVLMEQLTLKKMREIVGWPN-GEGDGIFSPGGAISNMYSVMVARYKHYPEIKIK 271

  Fly   257 GLFNAKPLIIFTSEDAHYSVEKLAMFMGFGSDHVRKIATNEVGKMRLSDLEKQVKLCLENGWQPL 321
            |:..|..|::||||.:|||::|.:..:|||::::..:.|:|.|::..:|||.:|....:.|:.|:
Zfish   272 GMAAAPRLVLFTSEHSHYSIKKASAVLGFGTENLILLRTDERGRVIPADLEAKVIDAKQKGFVPM 336

  Fly   322 MVSATAGTTVLGAFDDLAGISEVCKKYNMWMHVDAAWGGGALMSKKYRHLLNGIERADSVTWNPH 386
            .|:||||:||.||||.:..|:::|:|||||:|||.|||||.|||:|::|.|:|||||:|||||||
Zfish   337 FVNATAGSTVYGAFDPINEIADICEKYNMWLHVDGAWGGGLLMSRKHKHKLSGIERANSVTWNPH 401

  Fly   387 KLLAASQQCSTFLTRHQQVLAQCHSTNATYLFQKDKFYDTSFDTGDKHIQCGRRADVFKFWFMWK 451
            |::....|||..|.|.:.:|..|:|..|.||||.||.||.::|||||.|||||..|:||||.|||
Zfish   402 KMMGVPLQCSAILVREKGLLQGCNSMCAGYLFQPDKQYDVTYDTGDKAIQCGRHVDIFKFWLMWK 466

  Fly   452 AKGTQGLEAHVEKVFRMAEFFTAKVRERPGFELVLE-SPECTNISFWYVPPGLREMERNREFYDR 515
            :|||.|.|.|:::...::|:...|::.|.|:|:|.: .|:.||:.|||:||.||.:....|...|
Zfish   467 SKGTTGFEKHIDRCLELSEYLYHKIKNREGYEMVFQGEPQHTNVCFWYIPPSLRLLPDGEEKRHR 531

  Fly   516 LHKVAPKVKEGMIKKGSMMITYQPLRQLPNFFRLVLQNSCLEESDMVYFLDEIESLAQNL 575
            |||||||:|..|::.|:.|:.|||..:..||||:|:.|..:..||:.:.:||||.|.|:|
Zfish   532 LHKVAPKIKALMMECGTTMVGYQPQGEKVNFFRMVVSNPAVTRSDIDFLIDEIERLGQDL 591

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bNP_001246025.1 AAT_I 128..499 CDD:302748 183/374 (49%)
gad1aXP_002663350.1 Pyridoxal_deC 141..515 CDD:278699 183/374 (49%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG62386
OrthoDB 1 1.010 - - D162307at33208
OrthoFinder 1 1.000 - - FOG0000667
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X464
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
66.020

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