DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment b and gad1.2

DIOPT Version :9

Sequence 1:NP_001246025.1 Gene:b / 34791 FlyBaseID:FBgn0000153 Length:575 Species:Drosophila melanogaster
Sequence 2:XP_012819752.1 Gene:gad1.2 / 100145511 XenbaseID:XB-GENE-5830282 Length:554 Species:Xenopus tropicalis


Alignment Length:480 Identity:219/480 - (45%)
Similarity:322/480 - (67%) Gaps:10/480 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly   100 IRACVDEIIKLAVFQGTNRSSKVVEWHEPAEL---RQLFDFQLREQGESQDKLRELLRETIRFSV 161
            :|..::.|.|  .:.|   .|||:::|.|.:|   .:.|:.:|.:|.|..:::.....:|:::|:
 Frog    81 LRILLNHIKK--TYDG---ESKVLDFHHPHQLLEGLEGFNLELSDQPEPLEQILVDCSDTLKYSI 140

  Fly   162 KTGHPYFINQLYSGVDPYALVGQWLTDALNPSVYTYEVAPLFTLMEEQVLAEMRRIVGFPNGGQG 226
            |||||.:.|||..|:|...|.|:|||...|.:::|||:||:|.:|||.||.:|:.|:|: ...:.
 Frog   141 KTGHPRYFNQLSCGLDIIGLAGEWLTATANTNMFTYEIAPVFIIMEEIVLKKMQEIIGW-GENEA 204

  Fly   227 DGIFCPGGSIANGYAISCARYRHSPESKKNGLFNAKPLIIFTSEDAHYSVEKLAMFMGFGSDHVR 291
            ||||.|||:|:|.|::..|||::.|..|..|:.....::|||||.:|||.:|.:..:|.|:|:|.
 Frog   205 DGIFSPGGTISNLYSLQAARYKYFPMVKTKGMAALPQIVIFTSEQSHYSFKKASAILGIGTDNVI 269

  Fly   292 KIATNEVGKMRLSDLEKQVKLCLENGWQPLMVSATAGTTVLGAFDDLAGISEVCKKYNMWMHVDA 356
            .|..:|.|||..||||.::......|..|..|||||||||.||||.|..|:::||:|.:||||||
 Frog   270 AIKCDERGKMIPSDLEDKILKAKRQGQHPFYVSATAGTTVYGAFDPLITIADICKRYGLWMHVDA 334

  Fly   357 AWGGGALMSKKYRHLLNGIERADSVTWNPHKLLAASQQCSTFLTRHQQVLAQCHSTNATYLFQKD 421
            |||||.|:|||:|:.:||||||:||||||||::....|||..|.|.:.:|..|:...|.||||.|
 Frog   335 AWGGGLLLSKKHRYKMNGIERANSVTWNPHKIMGVPLQCSAILIRQKGLLQACNQQCADYLFQMD 399

  Fly   422 KFYDTSFDTGDKHIQCGRRADVFKFWFMWKAKGTQGLEAHVEKVFRMAEFFTAKVRERPGFELVL 486
            |.|||::|||||.|||||..|:||.|.||||||:.|.|..:.:...::|:...|::.:..||||.
 Frog   400 KPYDTAYDTGDKTIQCGRHVDIFKLWLMWKAKGSCGFELQINRCLELSEYLYNKLQSKSNFELVF 464

  Fly   487 -ESPECTNISFWYVPPGLREMERNREFYDRLHKVAPKVKEGMIKKGSMMITYQPLRQLPNFFRLV 550
             :.||.||:.|||:||.|..:.|::|:..||||:||::|..|:::|::|::|||....|||||:|
 Frog   465 RDKPEYTNVCFWYIPPSLEHVPRDKEWKARLHKIAPQIKARMMEEGTVMVSYQPQGDKPNFFRMV 529

  Fly   551 LQNSCLEESDMVYFLDEIESLAQNL 575
            ..|...::||:.:.|:|||.|.:.|
 Frog   530 FSNPASKKSDVDFLLEEIERLGKGL 554

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bNP_001246025.1 AAT_I 128..499 CDD:302748 177/374 (47%)
gad1.2XP_012819752.1 Pyridoxal_deC 104..478 CDD:365998 177/374 (47%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D162307at33208
OrthoFinder 1 1.000 - - FOG0000667
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X464
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
33.010

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