DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sos and CG34393

DIOPT Version :9

Sequence 1:NP_476597.2 Gene:Sos / 34790 FlyBaseID:FBgn0001965 Length:1596 Species:Drosophila melanogaster
Sequence 2:NP_001285578.1 Gene:CG34393 / 33534 FlyBaseID:FBgn0085422 Length:691 Species:Drosophila melanogaster


Alignment Length:622 Identity:111/622 - (17%)
Similarity:213/622 - (34%) Gaps:204/622 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   588 TKSMLDRHLDSILQDIERKHPLRMPSPEI-YKFAVPDSGDNIVLEERESAGVPMIKGATLCKLIE 651
            |.|:..::.|.:..|:. |:|.:....:| ::.:|..||..:.:..|       |....|..|||
  Fly   145 TISVGPKNEDLVQYDVP-KNPHKRSQCDINFESSVLGSGGIMYINGR-------IVSGPLDSLIE 201

  Fly   652 RLTYH--IYADPTFVRTFLTTYRYFCSPQQLLQLLVERFNIPDPSLVYQDTGTAGAGGMGGVGGD 714
            .|...  :..|..||.:||.:.|.|..|.:||..|::  ::|:...:..                
  Fly   202 TLLPKDVVDLDKEFVFSFLLSCRLFLRPHELLGRLLD--SVPESECLES---------------- 248

  Fly   715 KEHKNSHREDWKRYRKEYVQPVQFRVLNVLRHWVDHHFYDFEKDPMLLEKLLNFLEHVNGKSMRK 779
                                     ::::|..|.....||:..     |::::.::|:..:....
  Fly   249 -------------------------LVSLLAEWTMKFPYDYRD-----ERMMSHVKHIVARCSNS 283

  Fly   780 WVDSVLK-----IVQRKNEQEKSNKKIVYAYGHDPPPIEHHLSVPNDEITLLTLHPLELARQLTL 839
            .:::.:.     :::|..:.|:....:.....:|....|..|:.|.         ..:.|:.:..
  Fly   284 HLEAAVSQTLSALLKRLTDLERHEADLRACQTNDKSGPETPLNCPT---------ATQYAQIVCR 339

  Fly   840 LEFEMYKNVKPSELV--------------------GSPWTKKDKEVKSPNLLKIMKHTTNVTRWI 884
            :|.::.|::...|.:                    |:|...:|.: |:.||...:..:..:..::
  Fly   340 VEKKLAKHIGGEEFLQCSSMILLDKQKKWDQPSTSGAPPGAQDPK-KTCNLETYLDWSARLRLFV 403

  Fly   885 EKSITEAENYEERLAIMQRAIEVMMVMLELNNFNGILSIVAAMGTASVYRLRWTFQGLPERYRKF 949
            ...|.::...|.|...::....|....|.:.|:|...:|:.::.:.::.||:.|       :.|.
  Fly   404 CNEILQSVGIEGRSRTVELWSGVAQYCLLVGNYNSATAILESLESPAIARLKIT-------WSKL 461

  Fly   950 LEECRELSDDHLKKYQERLRSINPPCVPFFGRYLTNILHLEEGNPDLLANTELINFSKRRKVAEI 1014
            ...|::|  |.::::.|                                                
  Fly   462 QVTCQQL--DCMQRHAE------------------------------------------------ 476

  Fly  1015 IGEIQQYQNQPYCLNEESTIRQFFEQLDPFNGL-SDKQMSDYLYNESLRIEPRGCKTVPKFPRKW 1078
             |....:|.|...|||:.            .|| :|||                   .||.|   
  Fly   477 -GHGHLWQKQAISLNEQQ------------EGLKTDKQ-------------------APKEP--- 506

  Fly  1079 PHIPLKSPGIKPRR-----QNQTNSSSKLSNSTSSVAAAAAASSTATSIATASAPSLHASSIMDA 1138
                 .:.|..|.:     ...|:|.|....|||...|..|..|.|| :.:|..|....|:: ||
  Fly   507 -----AAQGAAPTQGAVAIAITTSSDSDEKPSTSGRVAGIAGISAAT-MESAPVPVASGSNV-DA 564

  Fly  1139 PTAAAA----NAGSGTLAGEQSPQHNPHAFSVFAPVI 1171
            .|||||    .|.:..||....| ::.....|||.::
  Fly   565 ATAAAARTSTTAATTPLASSGKP-NDWVVIPVFADIV 600

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SosNP_476597.2 Histone 90..216 CDD:278551
H2A 155..>196 CDD:305064
RhoGEF 249..432 CDD:238091
PH_SOS 476..586 CDD:269963
PH 482..587 CDD:278594
RasGEFN 637..791 CDD:214571 24/160 (15%)
RasGEF 825..1062 CDD:238087 37/257 (14%)
CG34393NP_001285578.1 REM 196..300 CDD:100121 23/151 (15%)
RasGEF 334..>473 CDD:279011 25/148 (17%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR23113
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
22.010

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