DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sos and Rasgrp3

DIOPT Version :9

Sequence 1:NP_476597.2 Gene:Sos / 34790 FlyBaseID:FBgn0001965 Length:1596 Species:Drosophila melanogaster
Sequence 2:XP_006239819.1 Gene:Rasgrp3 / 313874 RGDID:1304612 Length:691 Species:Rattus norvegicus


Alignment Length:391 Identity:79/391 - (20%)
Similarity:157/391 - (40%) Gaps:69/391 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   717 HKNSHREDWKRYRKEYVQPVQFRVLNVLRHWVDHHFYDFEKDPMLLEKLLNFLEHVNGKSMRKW- 780
            ::|:..|....:|        .::...:|:|:.....:|..|..|:.....|.|..:.....|. 
  Rat    59 YRNASGESCDEFR--------LKICYFMRYWITKFPAEFNLDLGLIRMTEEFREVASQLGYEKHS 115

  Fly   781 ----------VDSVLKIVQRKNEQEKSNKKIVYAYGHDPPPIEHHLSVPNDEITLLTLHPLELAR 835
                      .|.:.::.|||...::....:::         :|             |.|:|||.
  Rat   116 NLMDISSIPSY
DWMRRVTQRKKVSKRGKACLLF---------DH-------------LEPIELAE 158

  Fly   836 QLTLLEFEMYKNVKPSELVGSPWTKKDKEV------KSPNLLKIMKHTTNVTRWIEKSITEAENY 894
            .||.||.:.::.:.        :|.....|      .:|.|.:.:.....:::|::..:....:.
  Rat   159 HLTFLEHKSFRRIS--------FTDYQSYVIHGCLENNPTLERSIALFNGISKWVQLMVLSKPSA 215

  Fly   895 EERLAIMQRAIEVMMVMLELNNFNGILSIVAAMGTASVYRLRWTFQGLPERYRKFLEECREL--S 957
            ::|..::.:.|.|...:|:|.|||.::::|..:..:|:.||:.|...|.....|...|..||  |
  Rat   216 QQRAEVITKFINVAQKLLQLKNFNTLMAVVGGLSHSSISRLKDTHSHLSSEVTKNWNEMTELVSS 280

  Fly   958 DDHLKKYQERLRSINPPCVPFFGRYLTNILHLEEGNPDLLANTELINFSKRRKVAEIIGEIQQYQ 1022
            :.:...|::.....:...:|..|.:|.:::.:....||.:...: :|..|..:::..:.|:...|
  Rat   281 NGNYCNYRKAFADCDGFKIPILGVHLKDLIAVHVIFPDWMEENK-VNVVKMHQLSVTLSELVSLQ 344

  Fly  1023 NQPYCLNEE-STIRQFFEQLDPFNGLSDKQMSDYLYNESLRIEPRGCK---TVPKFPRKWPHIPL 1083
            |..:.|... ..|......||.::      ..|.:|..||.:|||..|   |.|..|.| |.:||
  Rat   345 NASHHLEPNMDLINLLTLSLDLYH------TEDDIYKLSLVLEPRNSKSQPTSPTTPNK-PVVPL 402

  Fly  1084 K 1084
            :
  Rat   403 E 403

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SosNP_476597.2 Histone 90..216 CDD:278551
H2A 155..>196 CDD:305064
RhoGEF 249..432 CDD:238091
PH_SOS 476..586 CDD:269963
PH 482..587 CDD:278594
RasGEFN 637..791 CDD:214571 13/84 (15%)
RasGEF 825..1062 CDD:238087 51/245 (21%)
Rasgrp3XP_006239819.1 REM 11..126 CDD:100121 11/74 (15%)
RasGEF 148..384 CDD:214539 55/272 (20%)
EF-hand_7 428..478 CDD:404394
C1_RASGRP3 488..546 CDD:410412
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3417
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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