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Protein Alignment CAH1 and Car5b

DIOPT Version :9

Sequence 1:	NP_523561.1	Gene:	CAH1 / 34786	FlyBaseID:	FBgn0027844	Length:	270	Species:	Drosophila melanogaster
Sequence 2:	NP_851832.2	Gene:	Car5b / 56078	MGIID:	1926249	Length:	317	Species:	Mus musculus

Alignment Length:	262	Identity:	111/262 - (42%)
Similarity:	143/262 - (54%)	Gaps:	16/262 - (6%)

- Green bases have known domain annotations that are detailed below.

  Fly    13 PAHWAKEYPQASGHRQSPVDITPSSAKKGSELNVAPLKWKYVPEHTKSLVNPGYCWRVDVNGA-- 75
            |..|.......:|.||||::|....:.....|.  ||...|.|.....:.|.||.:.|:...:
Mouse    49 PPLWENLDLVPAGDRQSPINIRWRDSVYDPGLK--PLTISYDPATCLHIWNNGYSFLVEFEDSTD 111

  Fly    76 DSELTGGPLGDQIFKLEQFHCHWGCTDSKGSEHTVDGVSYSGELHLVHWNTTKYKSFGEAAAAPD 140
            .|.:.|||| :..::|:|||.|||..|:.|||||||...|..||||||||..|::||.:||...:
Mouse   112 KSVVEGGPL-EHNYRLKQFHFHWGAIDAWGSEHTVDSKCYPAELHLVHWNAVKFESFEDAALEEN 175

  Fly   141 GLAVLGVFLKAGNHHAELDKVTSLLQFVLHKGDRVTLPQGCDPGQLLPDVHTYWTYEGSLTTPPC 205
            ||||:|||||.|.||.||.|:...|..:.|| |.:......||..|:|....||||.|||||||.
Mouse   176 GLAVIGVFLKLGKHHKELQKLVDTLPSIKHK-DTLVEFGSFDPSCLMPTCPDYWTYSGSLTTPPL 239

  Fly   206 SESVIWIVFKTPIEVSDDQLNAMRNL--NAYDVKEECPCNEFNGKVINNFRPPLPLGKRELREIG 268
            ||||.||:.|.|:||..|||...|.|  .:...||:        ::::||||..||..|.:|...
Mouse   240 SESVTWIIKKQPVEVDRDQLEQFRTLLFTSEGEKEK--------RMVDNFRPLQPLMNRTVRSSF 296

  Fly   269 GH 270
            .|
Mouse   297 RH 298

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.