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Protein Alignment CAH1 and Ca5a

DIOPT Version :9

Sequence 1:	NP_523561.1	Gene:	CAH1 / 34786	FlyBaseID:	FBgn0027844	Length:	270	Species:	Drosophila melanogaster
Sequence 2:	NP_062166.1	Gene:	Ca5a / 54233	RGDID:	2243	Length:	304	Species:	Rattus norvegicus

Alignment Length:	278	Identity:	115/278 - (41%)
Similarity:	156/278 - (56%)	Gaps:	32/278 - (11%)

- Green bases have known domain annotations that are detailed below.

  Fly     4 HWGYTEENGPAH--------WAKEYPQASGHRQSPVDITPSSAKKGSELNVAPLKWKYVPEHTKS 60
            ||.:.......|        |........|.:|||::|..:.:....:|  |||:..|.....:.
  Rat    31 HWRFQHSYAEKHSNCARHPLWTGPVSSPGGTQQSPINIQWTDSVYDPKL--APLRVSYDAASCRY 93

  Fly    61 LVNPGYCWRVDVNGA--DSELTGGPLGDQIFKLEQFHCHWGCTDSKGSEHTVDGVSYSGELHLVH 123
            |.|.||.::|:.:.:  :|.::|||||:. ::|:|||.|||.||..||||.|||.:|..||||||
  Rat    94 LWNTGYFFQVEFDDSCEESGISGGPLGNH-YRLKQFHFHWGATDEWGSEHMVDGHAYPAELHLVH 157

  Fly   124 WNTTKYKSFGEAAAAPDGLAVLGVFLKAGNHHAELDKVTSLLQFVLHKGDRVTLPQGCDPGQLLP 188
            ||:.||:::.:|....:||||:|||||.|.||..|.::..:|..|.||..:||:.. .||..|||
  Rat   158 WNSMKYENYKKATTGENGLAVIGVFLKLGAHHEALQRLVDILPEVRHKDTQVTMGP-FDPSCLLP 221

  Fly   189 DVHTYWTYEGSLTTPPCSESVIWIVFKTPIEVSDDQLNAMRNLNAYDVKEECPCNEFNGK----- 248
            ....||||.|||||||.:|||.|||.|.|||||..||:..|.|            .|:|:
  Rat   222 ACRDYWTYPGSLTTPPLAESVTWIVHKMPIEVSPSQLSTFRTL------------LFSGRGEDEE 274

  Fly   249 -VINNFRPPLPLGKRELR 265
             ::|||||..||..|.:|
  Rat   275 VMVNNFRPLQPLRGRNVR 292

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.