DRSC/TRiP Functional Genomics Resources

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Protein Alignment CAH1 and Ca3

DIOPT Version :9

Sequence 1:NP_523561.1 Gene:CAH1 / 34786 FlyBaseID:FBgn0027844 Length:270 Species:Drosophila melanogaster
Sequence 2:NP_062165.2 Gene:Ca3 / 54232 RGDID:2241 Length:260 Species:Rattus norvegicus


Alignment Length:267 Identity:113/267 - (42%)
Similarity:146/267 - (54%) Gaps:13/267 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSHHWGYTEENGPAHWAKEYPQASGHRQSPVDITPSSAKKGSELNVAPLKWKYVPEHTKSLVNPG 65
            |:..|||...|||.||.:.||.|.|..|||:::.....:....|.  |....|.|...|:::|.|
  Rat     1 MAKEWGYASHNGPEHWHELYPIAKGDNQSPIELHTKDIRHDPSLQ--PWSVSYDPGSAKTILNNG 63

  Fly    66 YCWRV--DVNGADSELTGGPLGDQIFKLEQFHCHWGCTDSKGSEHTVDGVSYSGELHLVHWNTTK 128
            ...||  |.....|.|.||||... ::|.|||.|||.:|..|||||||||.|:.|||||||| .|
  Rat    64 KTCRVVFDDTFDRSMLRGGPLSGP-YRLRQFHLHWGSSDDHGSEHTVDGVKYAAELHLVHWN-PK 126

  Fly   129 YKSFGEAAAAPDGLAVLGVFLKAGNHHAELDKVTSLLQFVLHKGDRVTLPQGCDPGQLLPDVHTY 193
            |.:||||...|||:||:|:|||.|....|...:...|..:..||..... ...||..|.|....|
  Rat   127 YNTFGEALKQPDGIAVVGIFLKIGREKGEFQILLDALDKIKTKGKEAPF-NHFDPSCLFPACRDY 190

  Fly   194 WTYEGSLTTPPCSESVIWIVFKTPIEVSDDQLNAMRNLNAYDVKEECPCNEFNGKVINNFRPPLP 258
            |||.||.|||||.|.::|::.|.|:.||.||:..:|:|.| ..:.|.|.     .::.|:|||.|
  Rat   191 WTYHGSFTTPPCEECIVWLLLKEPMTVSSDQMAKLRSLFA-SAENEPPV-----PLVGNWRPPQP 249

  Fly   259 LGKRELR 265
            :..|.:|
  Rat   250 IKGRVVR 256

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
CAH1NP_523561.1 Carb_anhydrase 5..263 CDD:215000 110/259 (42%)
Ca3NP_062165.2 alpha_CA_I_II_III_XIII 1..259 CDD:239393 113/267 (42%)
Involved in proton transfer. /evidence=ECO:0000250 64..67 0/2 (0%)