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Protein Alignment CAH1 and Car1

DIOPT Version :9

Sequence 1:	NP_523561.1	Gene:	CAH1 / 34786	FlyBaseID:	FBgn0027844	Length:	270	Species:	Drosophila melanogaster
Sequence 2:	NP_001101130.1	Gene:	Car1 / 310218	RGDID:	1309780	Length:	261	Species:	Rattus norvegicus

Alignment Length:	267	Identity:	122/267 - (45%)
Similarity:	154/267 - (57%)	Gaps:	14/267 - (5%)

- Green bases have known domain annotations that are detailed below.

  Fly     2 SHHWGYTEENGPAHWAKEYPQASGHRQSPVDITPSSAKKGSELNVAPLKWKYVPEHTKSLVNPGY 66
            |..|||..:|||..|:|.||.|:|:.|||:||..|.||..|.|.  |:...|.|...|.:||.|:
  Rat     3 SADWGYDSKNGPDQWSKLYPIANGNNQSPIDIKTSEAKHDSSLK--PVSVSYNPATAKEIVNVGH 65

  Fly    67 CWRV--DVNGADSELTGGPLGDQIFKLEQFHCHWGCTDSKGSEHTVDGVSYSGELHLVHWNTTKY 129
            .:.|  |.:...|.|.||||.|. ::|.|||.|||.::..||||||||..|||||||||||:.||
  Rat    66 SFHVVFDDSSNQSVLKGGPLADS-YRLTQFHFHWGNSNDHGSEHTVDGAKYSGELHLVHWNSAKY 129

  Fly   130 KSFGEAAAAPDGLAVLGVFLKAGNHHAELDKVTSLLQFVLHKGDRVTLPQGCDPGQLLPDVHTYW 194
            .|..||.:..||||::||.:|.|..:..|.||...|..|..||.|... ...||..|||....||
  Rat   130 SSAAEAISKADGLAIIGVLMKVGPANPNLQKVLDALSSVKTKGKRAPF-TNFDPSSLLPSSLDYW 193

  Fly   195 TYEGSLTTPPCSESVIWIVFKTPIEVSDDQLNAMRN-LNAYDVKEECPCNEFNGKVINNFRPPLP 258
            ||.||||.||..|||.|::.|..|.:|.:||..:|. |::.:.:...|       |::|.|||.|
  Rat   194 TYFGSLTHPPLHESVTWVICKESISLSPEQLAQLRGLLSSAEGEPAVP-------VLSNHRPPQP 251

  Fly   259 LGKRELR 265
            |..|.:|
  Rat   252 LKGRTVR 258

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.