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Protein Alignment CAH1 and Ca5b

DIOPT Version :9

Sequence 1:	NP_523561.1	Gene:	CAH1 / 34786	FlyBaseID:	FBgn0027844	Length:	270	Species:	Drosophila melanogaster
Sequence 2:	NP_001005551.1	Gene:	Ca5b / 302669	RGDID:	1549783	Length:	317	Species:	Rattus norvegicus

Alignment Length:	262	Identity:	111/262 - (42%)
Similarity:	142/262 - (54%)	Gaps:	16/262 - (6%)

- Green bases have known domain annotations that are detailed below.

  Fly    13 PAHWAKEYPQASGHRQSPVDITPSSAKKGSELNVAPLKWKYVPEHTKSLVNPGYCWRVDVNGA-- 75
            |..|.......:|.||||::|....:.....|.  ||...|.|.....:.|.||.:.|:....
  Rat    49 PPLWENLDLVPAGDRQSPINIRWRDSVYDPGLK--PLTISYDPATCLHIWNNGYSFLVEFEDTTD 111

  Fly    76 DSELTGGPLGDQIFKLEQFHCHWGCTDSKGSEHTVDGVSYSGELHLVHWNTTKYKSFGEAAAAPD 140
            .|.:.|||| :..::|:|||.|||..|:.|||||||...|..||||||||..|::||.:||...:
  Rat   112 KSVIEGGPL-EHNYRLKQFHFHWGAIDAWGSEHTVDSKCYPAELHLVHWNAVKFESFEDAALEEN 175

  Fly   141 GLAVLGVFLKAGNHHAELDKVTSLLQFVLHKGDRVTLPQGCDPGQLLPDVHTYWTYEGSLTTPPC 205
            ||||:|||||.|.||.||.|:...|..:.|| |.:......||..|:|....||||.|||||||.
  Rat   176 GLAVIGVFLKLGKHHKELQKLVDTLPSIKHK-DTLVKFGSFDPSCLMPTCPDYWTYSGSLTTPPL 239

  Fly   206 SESVIWIVFKTPIEVSDDQLNAMRNL--NAYDVKEECPCNEFNGKVINNFRPPLPLGKRELREIG 268
            ||||.||:.|.|:||..|||...|.|  .:...||:        ::::||||..||..|.:|...
  Rat   240 SESVTWIIKKQPVEVDHDQLEQFRTLLFTSEGEKEK--------RMVDNFRPLQPLMNRTVRSSF 296

  Fly   269 GH 270
            .|
  Rat   297 RH 298

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.