DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sec71 and Psd2

DIOPT Version :9

Sequence 1:NP_609675.2 Gene:Sec71 / 34785 FlyBaseID:FBgn0028538 Length:1653 Species:Drosophila melanogaster
Sequence 2:XP_006254639.1 Gene:Psd2 / 307500 RGDID:1311075 Length:772 Species:Rattus norvegicus


Alignment Length:715 Identity:153/715 - (21%)
Similarity:262/715 - (36%) Gaps:224/715 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   295 ELHSENDAVVTAKFTHILQKDAFLVFRALCKLSMKPLPDGHPDPKSHELRSKVLSLHLLLLILQN 359
            :||.|..|:.    .|.|:                  |:..|..::....|:.|:.|::..:.:.
  Rat     9 DLHKEEGAIQ----DHSLE------------------PEEGPGVQNGTAASESLNSHVISPVSEK 51

  Fly   360 AGPVFRSNEMFIMAIKQYLCVALSNNGVSLVPEVFELSLSIFVALLSNFKVHLKRQIEVFFKEIF 424
            .|.:..:.|            .:.|..|:| |.: .|||:..:||..:.                
  Rat    52 TGTLEGTME------------PVGNPDVAL-PGL-SLSLTNGLALGQDG---------------- 86

  Fly   425 LNILEANSSSFEHKWMVI------QALTRICADAQSVVDIYVNYDC--------DFSAANLFERL 475
             ||||.:..|  ..|...      .....:|.||:   |..:..||        .|||.  ||::
  Rat    87 -NILEDSVES--RPWRASGPAEEEDTPRSLCLDAE---DTQLGLDCPGEPDVRDGFSAT--FEKI 143

  Fly   476 VNDLSKIAQGRQ--------------------ALELGANPMQEKSMR----IRGLEC-------- 508
            :.  |::.:|.|                    :.|....|:.::..|    ..||..        
  Rat   144 LE--SELLRGTQYSSLDSLDVLSLTDESDSCVSFEAPLTPLIQQRARDSPEPAGLGIGDIGPEGD 206

  Fly   509 ----------LVSILKCMVEWSKDLYVNPNMPVPPMQVQSPTSTEQDQA----------DTTIQT 553
                      |.|.|:..:..|:...|..::.:..|    |....:|:.          :.|.:.
  Rat   207 LGAAGGGDGELGSPLRRSISSSRSENVLSHLSLTSM----PNGFHEDEPGGSGGDDEDDEDTDKV 267

  Fly   554 MHSGSSHSLNSNQEQLQDLPEALEERKMRKEVMETGIELFNRKPQ-KGVQFLQEKQLLGATCGDI 617
            ::|.|..||   ::.|.|....|...:        |:|..:..|. .|.|.:.|      ....:
  Rat   268 LNSASDTSL---KDGLSDSDSELSSSE--------GLEPGSTDPMANGCQGVSE------AARRL 315

  Fly   618 ARWLHEDERLDKTVIGNYIGENDDHSKEVMCAYIDAFDFRQMEVVAALRFLLEGFRLPGEAQKID 682
            ||.|:..|...:..:...:|:|::.|:.|...|:..|||..:.:..|||..|:.|.|.||.|:.:
  Rat   316 ARRLYHLEGFQRCDVARQLGKNNEFSRLVAGEYLSFFDFSGLTLDRALRTFLKAFPLMGETQERE 380

  Fly   683 RLMEKFASRYCECNPKNQLFQSADTVYVLAFSIIMLTTDLHS-PQVKHKMTKEQYI----KMNRG 742
            |::..|:.|||:|||.:.  .|.|.::.|..::::|.||||. ..:..||:.:|:|    ::|.|
  Rat   381 RVLTHFSRRYCQCNPDDS--TSEDGIHTLTCALMLLNTDLHGHVNIGKKMSCQQFIANLDQLNDG 443

  Fly   743 ISDSKSDLPEEYLSSIYDE-----ISEHEIKMKNNSGMLQQAKPTGKQAFITEKRRKLL--WNME 800
             .|...||.:...:||.:|     |.|.|:: |:.|.::.....||     |:|..::|  .|..
  Rat   444 -QDFAKDLLKTLYNSIKNEKLEWAIDEDELR-KSLSELVDDKFGTG-----TKKVTRILDGGNPF 501

  Fly   801 MEV-ISLTATNLMQSVSHVKSPFTSAKHLE---HVRPMFKMAWTPFLAAFSVGLQDCDDPEIATL 861
            ::| .:|:||.....|      .|...|.:   ...|..:..|..|.|...           .|:
  Rat   502 LDVPQALSATTYKHGV------LTRKTHADMDGKRTPRGRRGWKKFYAVLK-----------GTI 549

  Fly   862 CLDGIRCAIRIACIFHMSLERDAY--VQALARFTLLNA--------------NSPINEMKAKNID 910
                            :.|::|.|  .:||:...|.||              :...|.:|.|..|
  Rat   550 ----------------LYLQKDEYRPDKALSEGDLKNAIRVHHALATRASDYSKKSNVLKLKTAD 598

  Fly   911  910
              Rat   599  598

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sec71NP_609675.2 PLN03076 13..1580 CDD:215560 153/715 (21%)
DCB 30..212 CDD:292830
Sec7_N 312..465 CDD:289549 29/166 (17%)
Sec7 582..767 CDD:279680 57/195 (29%)
DUF1981 1080..1161 CDD:286414
Psd2XP_006254639.1 Sec7 295..463 CDD:238100 53/176 (30%)
PH_EFA6 509..632 CDD:270107 22/123 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166342756
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5307
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.740

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