DRSC/TRiP Functional Genomics Resources

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Protein Alignment p38b and sma-5

DIOPT Version :9

Sequence 1:NP_477361.1 Gene:p38b / 34780 FlyBaseID:FBgn0024846 Length:365 Species:Drosophila melanogaster
Sequence 2:NP_001041297.1 Gene:sma-5 / 181373 WormBaseID:WBGene00004859 Length:509 Species:Caenorhabditis elegans


Alignment Length:403 Identity:120/403 - (29%)
Similarity:207/403 - (51%) Gaps:62/403 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 RKMAKFYKLDINRTEWEIPETYQNLQPVGQGAYGQVCKAVVRGTSTKVAIKKLARPFQSAVHAKR 67
            |::...:||:      ...|||:..|.:|.||:|.||:||...::.||||||:|....:...|:|
 Worm    90 RQLQHDFKLE------RAAETYEPTQNIGSGAFGIVCEAVETSSNQKVAIKKVAHASATPTLARR 148

  Fly    68 TYRELRLLKHMDHENVIGLLDVFHPGQPADSLDQFQQVYMVTHLMDADLNNII--RTQKLSDDHV 130
            |.||:|:|::::|.|::.|.|:|....|. .:|    |::|..||..:|::||  ....|.:.::
 Worm   149 TLREIRVLRYINHPNIVPLRDIFRTKGPL-GID----VFLVMDLMQNNLHHIIYGNEDPLEEHYI 208

  Fly   131 QFLVYQILRGLKYIHSAGVIHRDLKPSNIAVNEDCELRILDFGLARPAESE------------MT 183
            ...:.|:||||:|:|:|.:.||||||||:.||:|..|||.|||:|:.|::.            ||
 Worm   209 NAFLGQLLRGLEYLHAACIAHRDLKPSNLLVNQDGTLRIADFGMAKCADNSSKKHDDEEHCYYMT 273

  Fly   184 GYVATRWYRAPEIMLNWMHYNQTADIWSVGCIMAELLTGRTLFPGTDHIHQLNLIMEVLGTPADE 248
            .:|||..|||||::.....::...|:|:||||..|::....:.||.....|:.:::.:||.|..|
 Worm   274 QHVATLPYRAPELLFVLPEHSTAVDMWAVGCIFGEMVIRNEILPGRSVQGQIKMLLTMLGQPPQE 338

  Fly   249 FMSRISSESARNYIRSLPVMPRRNFRDIF----RGANPL------AIDLLEKMLELDADKRITAE 303
            .::.:..:..|..|:.........:.||.    ||.:.:      .||.::::.:.||.|||..:
 Worm   339 VINEVRCDRTRKLIQDFGRKADAEWDDIMFCKARGDDQIVRGNCDTIDFVKQLFQYDAQKRINIQ 403

  Fly   304 QALAHPYMEK---------------------YHDPTDEQTAALYDQSFEENELPVEKWREMVFSE 347
            .||.|||:::                     ..|...::..::..|.....|.|:      .:||
 Worm   404 DALLHPYIQRVIPAEAPQKKCPFRVKKDMMQVEDLNHQELISMMKQDVRSAENPI------TYSE 462

  Fly   348 VTAFKPTAAFAEL 360
            :.:...|.:.:::
 Worm   463 LHSGDSTGSTSDM 475

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
p38bNP_477361.1 STKc_p38 8..353 CDD:143356 118/389 (30%)
S_TKc 24..311 CDD:214567 107/310 (35%)
sma-5NP_001041297.1 STKc_ERK5 102..446 CDD:270842 111/348 (32%)
S_TKc 105..411 CDD:214567 107/310 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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