DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG9014 and traf6

DIOPT Version :9

Sequence 1:NP_001285905.1 Gene:CG9014 / 34777 FlyBaseID:FBgn0028847 Length:328 Species:Drosophila melanogaster
Sequence 2:NP_001008162.2 Gene:traf6 / 493524 XenbaseID:XB-GENE-480628 Length:558 Species:Xenopus tropicalis


Alignment Length:147 Identity:48/147 - (32%)
Similarity:65/147 - (44%) Gaps:33/147 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 CPICTDVLEEPVQSSECEHAFCRACIDKWMIQKQI------CPVDRSGLLTSHLVPVSRLMRNML 76
            ||||...|.|.|| :.|.|.||:||     |.|.|      ||||...|:.:.|.|.:...|.:|
 Frog    72 CPICLMALREAVQ-TPCGHRFCKAC-----ILKSIRDAGHKCPVDNESLMENQLFPDNFAKREIL 130

  Fly    77 SRLKIKCTFSQSGCAQMLALEEFRTHVAACEHNPKVVVECSKGCGMKVPKDEMSRH--------- 132
            | |::||  ...||.:.:.|.....|:..|:.   ..||||: |....||..:.:|         
 Frog   131 S-LRVKC--PSQGCTETMELRHLERHLVRCDF---AGVECSQ-CQSSFPKYSLQKHKFEECPRRQ 188

  Fly   133 ----NCVFELRELVEKL 145
                ||...: .|.:||
 Frog   189 IFCENCAVAM-ALEDKL 204

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG9014NP_001285905.1 zf-C3HC4 18..55 CDD:278524 18/42 (43%)
USP8_interact 137..319 CDD:286082 3/9 (33%)
traf6NP_001008162.2 mRING-HC-C3HC3D_TRAF6 69..126 CDD:319557 24/59 (41%)
modified RING-HC finger (C3HC3D-type) 72..110 CDD:319557 19/43 (44%)
PLN03086 <134..220 CDD:178635 20/78 (26%)
zf-TRAF 206..263 CDD:280357
Smc <322..>384 CDD:224117
MATH_TRAF6 387..536 CDD:239745
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D918518at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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