DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG9014 and Pdzrn4

DIOPT Version :9

Sequence 1:NP_001285905.1 Gene:CG9014 / 34777 FlyBaseID:FBgn0028847 Length:328 Species:Drosophila melanogaster
Sequence 2:NP_001158065.1 Gene:Pdzrn4 / 239618 MGIID:3056996 Length:1014 Species:Mus musculus


Alignment Length:91 Identity:31/91 - (34%)
Similarity:47/91 - (51%) Gaps:3/91 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MGFDLNCIVGHVDEELICP-ICTDVLEEPVQSSECEHAFCRACIDKWMIQKQICPVDRSGLLTSH 64
            |||.|..:...||....|. :|..|||||. .:.|.|.||.:|:..|...::.||:....|....
Mouse     1 MGFALERLAEAVDPAFQCQLLCGQVLEEPA-CTPCGHVFCASCLLPWAAGRRWCPLQCQPLAPGE 64

  Fly    65 LVPVSRLMRNMLSRLKIKCTFSQSGC 90
            |..|..| |:::.:|:::|.:|..||
Mouse    65 LYRVLPL-RSLVQQLRVQCNYSGQGC 89

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG9014NP_001285905.1 zf-C3HC4 18..55 CDD:278524 14/37 (38%)
USP8_interact 137..319 CDD:286082
Pdzrn4NP_001158065.1 RING 18..55 CDD:214546 14/37 (38%)
PDZ 202..294 CDD:214570
PDZ_signaling 383..465 CDD:238492
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0297
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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