DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Gpo3 and SDP6

DIOPT Version :9

Sequence 1:NP_609667.2 Gene:Gpo3 / 34776 FlyBaseID:FBgn0028848 Length:626 Species:Drosophila melanogaster
Sequence 2:NP_187648.1 Gene:SDP6 / 820199 AraportID:AT3G10370 Length:629 Species:Arabidopsis thaliana


Alignment Length:571 Identity:212/571 - (37%)
Similarity:318/571 - (55%) Gaps:39/571 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 VPSRAEHVNALKA----EEFDVLIIGGGAVGCGCAVDAACRGLKTALIEAEDFASGSSSRTSKLI 64
            ||||:...:||.|    :..|||:|||||.|.|.|:||..|||:..|:|.|||:||:|||::|||
plant    55 VPSRSAQESALIAATASDPLDVLVIGGGATGSGVALDAVTRGLRVGLVEREDFSSGTSSRSTKLI 119

  Fly    65 DGSGSYLGTALREKDVEQLYIMLQMMSERVTMLKNAPHLNRIQPMIIPIYSFLQMPCTWLGLKVY 129
            .|...||..|:...|..||.::...:.||..:::|||||....|.:.|.:.:.::...|:|||:|
plant   120 HGGVRYLEKAVFNLDYGQLKLVFHALEERKQLIENAPHLCHALPCMTPCFDWFEVIYFWMGLKMY 184

  Fly   130 DWISAASNIRGSHIISREATMYEFPLL----KTDGLRGGVVYYDGQVDDARMCVALVMTAVALGA 190
            |.::....:..|...|.:.::..||.|    |...|||.|||||||::|:|:.|.|..||...||
plant   185 DLVAGPRLLHLSRYYSAKESIELFPTLARKGKDKNLRGTVVYYDGQMNDSRLNVGLACTAALAGA 249

  Fly   191 NVGNHMEVVEIMPQEGCCRVVS--VKDKISCEQFYIQSKAVINATGSSTDAIRQMDKEGTAPILL 253
            .|.||.|||.::..:...|::.  :::.::.::|...:|.|:||.|...|:||:|..|.|.|::.
plant   250 AVLNHAEVVSLITDDATKRIIGARIRNNLTGQEFNSYAKVVVNAAGPFCDSIRKMIDEDTKPMIC 314

  Fly   254 PTLETQVSLPRYFGSGHYGLLSPALKNDDLTVYMVPFENHMVLGSREVDLDEVSSRGSPTPDPDD 318
            |:....:.||.|:.....||:.|..| |...|:|:|:....|.|:.:   ...|....|.|..|:
plant   315 PSSGVHIVLPDYYSPEGMGLIVPKTK-DGRVVFMLPWLGRTVAGTTD---SNTSITSLPEPHEDE 375

  Fly   319 VDCLLEAAKKRMDPCVELGRCHVLSAWTAIKASVSCPTDKENDDDKRGTPINSYMIEVSPDGLIT 383
            :..:|:|....::  :::.|..|||||:.|:.....||.|..:...|    :..:.|.:| ||:|
plant   376 IQFILDAISDYLN--IKVRRTDVLSAWSGIRPLAMDPTAKSTESISR----DHVVFEENP-GLVT 433

  Fly   384 LAGGRWSSYRVMAADAVDLAIKSCGLCDDHVTSSWTQDLKLDGAESW----CCMLPLEFV---QD 441
            :.||:|::||.||.||||.||||..|  .......||.|:|.|:..|    ...|..::|   :.
plant   434 ITGGKWTTYRSMAEDAVDAAIKSGQL--KPTNECVTQKLQLLGSYGWEPSSFTTLAQQYVRMKKT 496

  Fly   442 YG---VP--MD--VAHHISDSYGYNGH--ALFSQAPDLKKRLHPSFPYIEAEIQYAMRNEYACTL 497
            ||   ||  ||  .|.|:|.:||....  |..:|...|.|||....|::|||:.|..|:||..:.
plant   497 YGGKVVPGAMDTAAAKHLSHAYGSMADRVATIAQEEGLGKRLAHGHPFLEAEVAYCARHEYCESA 561

  Fly   498 VDIIARRLRIAFVDAAATLHMLPRILKIMAGENGWDEEEQKEQMVAAQEFL 548
            ||.||||.||||:|..|....|.|:::|:|.|:.||:..||:::..|:|||
plant   562 VDFIARRCRIAFLDTDAAARALQRVVEILASEHKWDKSRQKQELQKAKEFL 612

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Gpo3NP_609667.2 GlpA 7..554 CDD:223651 209/568 (37%)
DAO_C 417..537 CDD:293506 52/135 (39%)
SDP6NP_187648.1 PLN02464 1..629 CDD:215257 212/571 (37%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 77 1.000 Domainoid score I3086
eggNOG 1 0.900 - - E1_COG0578
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D669193at2759
OrthoFinder 1 1.000 - - FOG0002536
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11985
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X1659
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
87.880

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