DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Gpo3 and Gpd2

DIOPT Version :10

Sequence 1:NP_609667.2 Gene:Gpo3 / 34776 FlyBaseID:FBgn0028848 Length:626 Species:Drosophila melanogaster
Sequence 2:NP_036868.1 Gene:Gpd2 / 25062 RGDID:2726 Length:727 Species:Rattus norvegicus


Alignment Length:653 Identity:233/653 - (35%)
Similarity:368/653 - (56%) Gaps:47/653 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 PSRAEHVNALK-AEEFDVLIIGGGAVGCGCAVDAACRGLKTALIEAEDFASGSSSRTSKLIDGSG 68
            |||...:..|: ..|||:|:|||||.|||||:||..|||||||:|..|||||:|||::|||.|..
  Rat    55 PSREAQLMTLQNTSEFDILVIGGGATGCGCALDAVTRGLKTALVERNDFASGTSSRSTKLIHGGV 119

  Fly    69 SYLGTALREKDVEQLYIMLQMMSERVTMLKNAPHLNRIQPMIIPIYSFLQMPCTWLGLKVYDWIS 133
            .||..|:...||||..::.:.:.||..:|:.||||:...|:::|:|.:.|:|..|:|:|:||.::
  Rat   120 RYLQKAITNLDVEQYRMVKEALHERANLLEIAPHLSAPLPIMLPLYKWWQLPYYWVGIKMYDLVA 184

  Fly   134 AASNIRGSHIISREATMYEFPLLKTDGLRGGVVYYDGQVDDARMCVALVMTAVALGANVGNHMEV 198
            .:..::.|:::|:...:..||:|:.|.|.|.:||||||.:||||.:|:.:||...||...|:|||
  Rat   185 GSHCLKSSYVLSKSRALEHFPMLQKDKLVGAIVYYDGQHNDARMNLAIALTAARYGAATANYMEV 249

  Fly   199 VEIM----PQEGCCRV--VSVKDKISCEQFYIQSKAVINATGSSTDAIRQMDKEGTAPILLPTLE 257
            |.::    |:.|..||  ...||.::..:|.:::|.||||||..||::|:||.....||..|:..
  Rat   250 VSLLKKTDPETGKERVSGARCKDVLTGHEFNVRAKCVINATGPFTDSVRKMDDNDVVPICQPSAG 314

  Fly   258 TQVSLPRYFGSGHYGLLSPALKNDDLTVYMVPFENHMVLGSREVDLDEVSSRGSPTPDPDDVDCL 322
            ..:.:|.|:...:.|||.|| .:|...::.:|:|...:.|:.:...|...   .|.|..||::.:
  Rat   315 VHIVMPGYYSPENMGLLDPA-TSDGRVIFFLPWEKMTIAGTTDSPTDVTH---HPIPSEDDINFI 375

  Fly   323 LEAAKKRMDPCVELGRCHVLSAWTAIKASVSCPTDKENDDDKRGTPINSYMIEVSPDGLITLAGG 387
            |...:..:...||:.|..||:||:.|:..|:.|.........|     ::::|||..||||:|||
  Rat   376 LNEVRNYLSCDVEVRRGDVLAAWSGIRPLVTDPKSANTQSISR-----NHVVEVSDSGLITIAGG 435

  Fly   388 RWSSYRVMAADAVDLAIKSCGLCDDHVTSSWTQDLKLDGAESWCCMLPLEFVQDYGVPMDVAHHI 452
            :|::||.||.|.|:.|:|...|   :...|.|..|.|.|.:.|...|.:..|||||:..:||.|:
  Rat   436 KWTTYRSMAEDTVNKAVKLHNL---NAGPSRTVGLFLQGGKDWSPTLYIRLVQDYGLESEVAQHL 497

  Fly   453 SDSYGYNGHALFSQA-------PDLKKRLHPSFPYIEAEIQYAMRNEYACTLVDIIARRLRIAFV 510
            :.:||.....:...|       |.:..||...|||||||::|.:: |||||.||:|:||.|:||:
  Rat   498 AKTYGDKAFDVAKMASVTGKRWPVVGVRLVSEFPYIEAEVKYGIK-EYACTAVDMISRRTRLAFL 561

  Fly   511 DAAATLHMLPRILKIMAGENGWDEEEQKEQMVAAQEFLVRQMGLGSIVQPRSTSK---------S 566
            :..|....||:|:::|..|..|.|..::|::..|..||..:||..|..:..:.|.         .
  Rat   562 NVQAAEEALPKIVELMGRELNWSELRKQEELETATRFLYYEMGYKSRTEQLTDSTEISLLPPDID 626

  Fly   567 KPKKK-----GSSEGCCCRAAVRRGARSYSMEISKK-----ICVQPLVQHRSMS-SMFLPLMTSL 620
            :.||:     ...:|......|:|...|.::::.:.     :|...|.::..:. ..||.||:::
  Rat   627 RYKKRFHMFDEDEKGFITIVDVQRVLESINVQMDEDTLHEILCEVDLNKNGQVELHEFLQLMSAV 691

  Fly   621 SYG 623
            ..|
  Rat   692 HTG 694

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Gpo3NP_609667.2 DAO 3..548 CDD:477422 214/556 (38%)
Gpd2NP_036868.1 DAO 1..599 CDD:477422 214/556 (38%)
EFh 627..689 CDD:238008 11/61 (18%)

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