DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment LRRTM1 and Fili

DIOPT Version :9

Sequence 1:NP_849161.2 Gene:LRRTM1 / 347730 HGNCID:19408 Length:522 Species:Homo sapiens
Sequence 2:NP_001369108.1 Gene:Fili / 5740472 FlyBaseID:FBgn0085397 Length:789 Species:Drosophila melanogaster


Alignment Length:627 Identity:140/627 - (22%)
Similarity:229/627 - (36%) Gaps:177/627 - (28%)


- Green bases have known domain annotations that are detailed below.


Human    20 VVLCLLGACFQMLPAAPSGCPQLCRCEGRLLYCEALNLTEAPHNLSGLLGLSLRYNSL--SELRA 82
            |:|.||.....:.|...:.||..|:|.|......||.:..|..::...|....:|.:|  :.:|.
  Fly    23 VLLLLLLTLVILPPETTAFCPSKCQCLGGEANSRALCVDAALEDVPIQLNPETKYINLTVNRIRT 87

Human    83 GQFT--GLMQLTWLYLDHNHICSVQGDAFQKLRRVKELTLSSNQITQLPNTTFRPMPNLRSVDLS 145
            .:|:  ..|:|..|.|..|.|.::....|:....::.|.||.|.::.|....|:.:.||..:|||
  Fly    88 LEFSLPFYMKLEILDLSQNIIETLGSKNFEYQSELRTLNLSRNLVSSLHKHAFKGLTNLLLLDLS 152

Human   146 YNKLQALAP------------DL------------FHGLRKLTTLHMRANAIQFVPVRIFQDCRS 186
            :|:::.:.|            ||            |.|:..|..|..|.|.:..||........:
  Fly   153 FNRIETVHPTALSDLASLVELDLTNNNIVSLEDNCFKGMNTLEVLVFRNNRLLDVPASNLWHLHA 217

Human   187 LKFLDIGYNQLKSLARNSFAGLFKLTELHLEHNDLVKVNFAHFPRLISLHSLCLRRNKVAIV-VS 250
            ||.||:..|.::.:..:||.||.:|..|.::.|.:.:::.:.|..||||..|.|..|.:.:| ..
  Fly   218 LKSLDMSLNLVEFVRNDSFEGLKELLALSVQGNVMSELDLSAFEGLISLKHLDLSDNNLTMVPTQ 282

Human   251 SLDWVWNLEKMDLSGNE-------------------------IEYMEPHVFETVPHLQSLQLDSN 290
            .|..:.||..::|.||.                         ::.::...|....|||:|.|::|
  Fly   283 QLSKLSNLTYLNLGGNRFSQLPAVAFLNLFHLRELHLSRLDFLQRIDSRAFVDNTHLQTLHLNNN 347

Human   291 --------RLTYIEPRIL------NSWKSLTS----------ITLAGNLWDCGRNVCALASWL-- 329
                    ||....|.||      ||.::|.|          :.|..|...|.   |:|. ||  
  Fly   348 PQLSDIPMRLFQGNPNILEVYMQSNSLQTLYSAQFPVDQLQKLYLGDNPLQCN---CSLL-WLWR 408

Human   330 ---NNFQG------RYDGNLQCASPEYAQGEDVLDAVYAFHLCEDGAEPTSG-----HLLSAVTN 380
               .||:|      ...|....|..:.|..|::.|...|....:||....:.     |:::|   
  Fly   409 LVTGNFEGVDPGMEHAAGGAVAALAKEADDEELADEATAVASTDDGVAALAAYIAEQHIVNA--- 470

Human   381 RSDLGPPASSATTLADGGEGQHDG-------------------------TFEPATVALPGGEHAE 420
               |.....||..||.....::.|                         |.....:..|.     
  Fly   471 ---LHTTEPSAYELATSSSNRNSGILRMDRQQIGCDIWRDKVRTRRKLLTMSEGEITCPA----- 527

Human   421 NAVQIHKVVTGTMALIFSFLIVVLVLYVSWKCFPASLRQLRQCFVTQRRKQKQKQTMHQMAAMSA 485
                  .:||...|:|...|:.::.:.|        |..||  ||.:|||     .:|:...|..
  Fly   528 ------HIVTVVCAVITCLLVAMIGISV--------LYYLR--FVKRRRK-----LLHERGPMRT 571

Human   486 QEYYVD--------YKP--------------NHIEGALVIIN 505
            .:..::        :.|              ||:.|..:.:|
  Fly   572 SKSIINVHDRILQGHNPGGLGLGMSMTLGGGNHVNGLGMTLN 613

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LRRTM1NP_849161.2 LRR 1 64..87 5/26 (19%)
LRR_8 73..125 CDD:290566 15/55 (27%)
LRR_RI <85..268 CDD:238064 58/234 (25%)
LRR 2 89..111 7/21 (33%)
leucine-rich repeat 91..114 CDD:275380 6/22 (27%)
LRR 3 112..135 6/22 (27%)
LRR_8 113..173 CDD:290566 21/83 (25%)
leucine-rich repeat 115..138 CDD:275380 6/22 (27%)
LRR 4 137..159 10/45 (22%)
leucine-rich repeat 139..162 CDD:275380 10/46 (22%)
LRR_8 161..221 CDD:290566 18/59 (31%)
LRR 5 161..183 6/21 (29%)
leucine-rich repeat 163..186 CDD:275380 6/22 (27%)
LRR 6 184..207 7/22 (32%)
leucine-rich repeat 187..210 CDD:275380 9/22 (41%)
LRR 7 209..231 4/21 (19%)
leucine-rich repeat 211..234 CDD:275380 5/22 (23%)
LRR 8 233..255 8/22 (36%)
leucine-rich repeat 235..257 CDD:275380 6/22 (27%)
LRR 9 256..278 6/46 (13%)
LRR_8 257..315 CDD:290566 22/106 (21%)
LRR_4 257..297 CDD:289563 14/72 (19%)
leucine-rich repeat 258..281 CDD:275380 5/47 (11%)
LRR 10 279..302 11/36 (31%)
leucine-rich repeat 282..300 CDD:275380 8/25 (32%)
leucine-rich repeat 306..318 CDD:275378 4/21 (19%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 382..401 5/18 (28%)
FiliNP_001369108.1 leucine-rich repeat 75..97 CDD:275378 4/21 (19%)
leucine-rich repeat 98..121 CDD:275380 6/22 (27%)
LRR_8 120..180 CDD:404697 15/59 (25%)
leucine-rich repeat 122..145 CDD:275380 6/22 (27%)
leucine-rich repeat 146..169 CDD:275380 6/22 (27%)
LRR <161..>354 CDD:227223 45/192 (23%)
leucine-rich repeat 170..193 CDD:275380 4/22 (18%)
leucine-rich repeat 194..217 CDD:275380 6/22 (27%)
leucine-rich repeat 218..265 CDD:275380 14/46 (30%)
leucine-rich repeat 266..289 CDD:275380 6/22 (27%)
leucine-rich repeat 290..313 CDD:275380 4/22 (18%)
leucine-rich repeat 314..338 CDD:275380 1/23 (4%)
LRR_8 337..397 CDD:404697 17/59 (29%)
leucine-rich repeat 339..360 CDD:275380 7/20 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR24373
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
22.010

Return to query results.
Submit another query.