DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Hsp60D and CPN60A

DIOPT Version :9

Sequence 1:NP_609656.1 Gene:Hsp60D / 34763 FlyBaseID:FBgn0032525 Length:558 Species:Drosophila melanogaster
Sequence 2:NP_180367.1 Gene:CPN60A / 817344 AraportID:AT2G28000 Length:586 Species:Arabidopsis thaliana


Alignment Length:539 Identity:181/539 - (33%)
Similarity:303/539 - (56%) Gaps:7/539 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 RAGVRTFANDIRFGAEARCLLMQGVNVLANAVATTLGPKGRNVLIEQLLISPRITKDGITVANNV 74
            |..||....:|.|...:|..|..|::.||:.|..||||:||||:::: ..||::..||:|:|..:
plant    41 RFSVRANVKEIAFDQHSRAALQAGIDKLADCVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAI 104

  Fly    75 QLGNRRQDMGVQLLRQATNNTNNKVGDGTTTATILARGIACQGMHVLRQSKVNVQLLREGILEGS 139
            :|.|..::.|..|:|:..:.||:..|||||||:||||.|...|: :...|..|...|:.||.:..
plant   105 ELPNAMENAGAALIREVASKTNDSAGDGTTTASILAREIIKHGL-LSVTSGANPVSLKRGIDKTV 168

  Fly   140 RAVCDALGEMSQSVDTIGQVEAVAKVALNGDERLAELIGDIILELGDSGVILLKESHSPFDEAKI 204
            :.:.:.|.:.::.|.....:.|||.::...|:.:..:|.|.|.::|..||:.::.|.|.....::
plant   169 QGLIEELQKKARPVKGRDDIRAVASISAGNDDLIGSMIADAIDKVGPDGVLSIESSSSFETTVEV 233

  Fly   205 QEGITIASGYYSPFFAKQSHTL--ELENCLLLLTLAKIDQVEQILPALELARLKERPLLIIAKNF 267
            :||:.|..||.||.|......|  |.||..:|:|..||..::.|:|.||.......||||||::.
plant   234 EEGMEIDRGYISPQFVTNPEKLLAEFENARVLITDQKITAIKDIIPILEKTTQLRAPLLIIAEDV 298

  Fly   268 GSDLLKILVLNNLQGRVQVCAVKAPSFGDEQCEEMEDIAFATGG-HLLEDASSLADLSEEDLGEV 331
            ..:.|..||:|.|:|.:.|.|||||.||:.:...::|||..||. :|..|.|.|.:.:..|...:
plant   299 TGEALATLVVNKLRGVLNVVAVKAPGFGERRKAMLQDIAILTGAEYLAMDMSLLVENATIDQLGI 363

  Fly   332 MEAVVDAKETHLLQPINVNEEQVQCRIQDIRELIDEAFTDVELDRLKTRLGRLQGHLATIFVGGT 396
            ...|..:|::..|.....:::::|.||..:::.:.|..:..:.::|..|:.:|.|.:|.|.||..
plant   364 ARKVTISKDSTTLIADAASKDELQARIAQLKKELFETDSVYDSEKLAERIAKLSGGVAVIKVGAA 428

  Fly   397 SELEVSERKDRFNDALHAVRVAISDGVVPGGGTAYLRCIPVLDELPPT-DIMELQVGREIVKDAL 460
            :|.|:.:||.|..||.:|...||.:|:|||||.|.:....|:..:..| :..:.::|.:||:.||
plant   429 TETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSTVIPAIKETFEDADERLGADIVQKAL 493

  Fly   461 RLPCYTIARNAGVDPNEVLRRVLKGSGNYGYDAAAGEFGDLVVRGIVDPTKVLQSAMTSAAGIAS 525
            ..|...||:||||:...|:.:::......||:|....:.:|...|::||.||.:.|:.:||.:|.
plant   494 LSPAALIAQNAGVEGEVVVEKIMFSDWENGYNAMTDTYENLFEAGVIDPAKVTRCALQNAASVAG 558

  Fly   526 LLATTEVLITKQPTKPKIP 544
            ::.||:.::..:| |||.|
plant   559 MVLTTQAIVVDKP-KPKAP 576

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hsp60DNP_609656.1 PTZ00114 13..546 CDD:185455 180/536 (34%)
GroEL 18..536 CDD:239460 173/521 (33%)
CPN60ANP_180367.1 GroEL 49..569 CDD:239460 173/521 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0459
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D415781at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR45633
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
54.880

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