DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Hsp60D and Hspd1

DIOPT Version :9

Sequence 1:NP_609656.1 Gene:Hsp60D / 34763 FlyBaseID:FBgn0032525 Length:558 Species:Drosophila melanogaster
Sequence 2:NP_071565.2 Gene:Hspd1 / 63868 RGDID:621314 Length:573 Species:Rattus norvegicus


Alignment Length:536 Identity:226/536 - (42%)
Similarity:354/536 - (66%) Gaps:8/536 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 RTFANDIRFGAEARCLLMQGVNVLANAVATTLGPKGRNVLIEQLLISPRITKDGITVANNVQLGN 78
            |.:|.|::|||:||.|::|||::||:|||.|:|||||.|:|||...||::||||:|||.::.|.:
  Rat    24 RAYAKDVKFGADARALMLQGVDLLADAVAVTMGPKGRTVIIEQSWGSPKVTKDGVTVAKSIDLKD 88

  Fly    79 RRQDMGVQLLRQATNNTNNKVGDGTTTATILARGIACQGMHVLRQSKVNVQLLREGILEGSRAVC 143
            :.:::|.:|::...||||.:.||||||||:|||.||.:|...:.:....|: :|.|::....||.
  Rat    89 KYKNIGAKLVQDVANNTNEEAGDGTTTATVLARSIAKEGFEKISKGANPVE-IRRGVMLAVDAVI 152

  Fly   144 DALGEMSQSVDTIGQVEAVAKVALNGDERLAELIGDIILELGDSGVILLKESHSPFDEAKIQEGI 208
            ..|.:.|:.|.|..::..||.::.|||:.:..:|.|.:.::|..|||.:|:..:..||.:|.||:
  Rat   153 AELKKQSKPVTTPEEIAQVATISANGDKDIGNIISDAMKKVGRKGVITVKDGKTLNDELEIIEGM 217

  Fly   209 TIASGYYSPFFAKQS--HTLELENCLLLLTLAKIDQVEQILPALELARLKERPLLIIAKNFGSDL 271
            ....||.||:|...|  ...|.::..:||:..||..|:.|:||||:|....:||:|||::...:.
  Rat   218 KFDRGYISPYFINTSKGQKCEFQDAYVLLSEKKISSVQSIVPALEIANAHRKPLVIIAEDVDGEA 282

  Fly   272 LKILVLNNLQGRVQVCAVKAPSFGDEQCEEMEDIAFATGGHLLEDAS---SLADLSEEDLGEVME 333
            |..||||.|:..:||.|||||.|||.:..:::|:|.||||.:..:..   :|.|:...|||:|.|
  Rat   283 LSTLVLNRLKVGLQVVAVKAPGFGDNRKNQLKDMAIATGGAVFGEEGLNLNLEDVQAHDLGKVGE 347

  Fly   334 AVVDAKETHLLQPINVNEEQVQCRIQDIRELIDEAFTDVELDRLKTRLGRLQGHLATIFVGGTSE 398
            .:|...:..||:. ..::..::.|||:|.|.:|...::.|.::|..||.:|...:|.:.|||||:
  Rat   348 VIVTKDDAMLLKG-KGDKAHIEKRIQEITEQLDITTSEYEKEKLNERLAKLSDGVAVLKVGGTSD 411

  Fly   399 LEVSERKDRFNDALHAVRVAISDGVVPGGGTAYLRCIPVLDELPPTDIMELQVGREIVKDALRLP 463
            :||:|:|||..|||:|.|.|:.:|:|.|||.|.|||||.||.|.|.: .:.::|.||:|.||::|
  Rat   412 VEVNEKKDRVTDALNATRAAVEEGIVLGGGCALLRCIPALDSLKPAN-EDQKIGIEIIKRALKIP 475

  Fly   464 CYTIARNAGVDPNEVLRRVLKGSGNYGYDAAAGEFGDLVVRGIVDPTKVLQSAMTSAAGIASLLA 528
            ..|||:||||:.:.::.::|:.|...||||..|:|.::|.:||:|||||:::|:..|||:||||.
  Rat   476 AMTIAKNAGVEGSLIVEKILQSSSEVGYDAMLGDFVNMVEKGIIDPTKVVRTALLDAAGVASLLT 540

  Fly   529 TTEVLITKQPTKPKIP 544
            |.|.::|:.|.:.|.|
  Rat   541 TAEAVVTEIPKEEKDP 556

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hsp60DNP_609656.1 PTZ00114 13..546 CDD:185455 226/536 (42%)
GroEL 18..536 CDD:239460 220/522 (42%)
Hspd1NP_071565.2 GroEL 28..548 CDD:239460 220/522 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166341490
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0459
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D183447at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR45633
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
65.850

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