DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Hsp60D and hspd1

DIOPT Version :9

Sequence 1:NP_609656.1 Gene:Hsp60D / 34763 FlyBaseID:FBgn0032525 Length:558 Species:Drosophila melanogaster
Sequence 2:NP_851847.1 Gene:hspd1 / 282676 ZFINID:ZDB-GENE-021206-1 Length:575 Species:Danio rerio


Alignment Length:534 Identity:220/534 - (41%)
Similarity:352/534 - (65%) Gaps:8/534 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 RTFANDIRFGAEARCLLMQGVNVLANAVATTLGPKGRNVLIEQLLISPRITKDGITVANNVQLGN 78
            |.:|.|::|||:||.|::|||::||:|||.|:|||||.|:|||...||::||||:|||.::.|.:
Zfish    24 RAYAKDVKFGADARALMLQGVDLLADAVAVTMGPKGRTVIIEQSWGSPKVTKDGVTVAKSIDLKD 88

  Fly    79 RRQDMGVQLLRQATNNTNNKVGDGTTTATILARGIACQGMHVLRQSKVNVQLLREGILEGSRAVC 143
            |.:::|.:|::...||||.:.||||||||:|||.:|.:|...:.:....|: :|.|::.....|.
Zfish    89 RYKNIGAKLVQDVANNTNEEAGDGTTTATVLARAVAKEGFDTISKGANPVE-IRRGVMMAVEEVI 152

  Fly   144 DALGEMSQSVDTIGQVEAVAKVALNGDERLAELIGDIILELGDSGVILLKESHSPFDEAKIQEGI 208
            ..|.:.|:.|.|..::..||.::.|||..:..:|.:.:.::|..|||.:|:..:..||.:|.||:
Zfish   153 SELKKNSKPVTTPEEIAQVATISANGDTEVGNIISNAMKKVGRKGVITVKDGKTLHDELEIIEGM 217

  Fly   209 TIASGYYSPFF--AKQSHTLELENCLLLLTLAKIDQVEQILPALELARLKERPLLIIAKNFGSDL 271
            ....||.||:|  ..:....|.::..:||:..||..|:.|:||||:|....:||:|:|::...:.
Zfish   218 KFDRGYISPYFINTAKGQKCEFQDAYVLLSEKKISSVQSIVPALEIANQHRKPLVIVAEDVDGEA 282

  Fly   272 LKILVLNNLQGRVQVCAVKAPSFGDEQCEEMEDIAFATGGHLLEDAS---SLADLSEEDLGEVME 333
            |..||||.|:..:||.|||||.|||.:..:::|:|.:|||.:..|.:   :|.|:...|.|:|.|
Zfish   283 LSTLVLNRLKVGLQVVAVKAPGFGDNRKNQLQDMAVSTGGTVFGDEAMGLALEDIQAHDFGKVGE 347

  Fly   334 AVVDAKETHLLQPINVNEEQVQCRIQDIRELIDEAFTDVELDRLKTRLGRLQGHLATIFVGGTSE 398
            .:|...:|.||:. ..:...::.|:.:|.|.::...:|.|.::|..||.:|...:|.|.|||||:
Zfish   348 VIVTKDDTMLLKG-RGDASAIEKRVNEIAEQLESTNSDYEKEKLNERLAKLSDGVAVIKVGGTSD 411

  Fly   399 LEVSERKDRFNDALHAVRVAISDGVVPGGGTAYLRCIPVLDELPPTDIMELQVGREIVKDALRLP 463
            :||:|:|||..|||:|.|.|:.:|:|||||.|.|||||.||.:.|.: .:.::|.:|::.:||:|
Zfish   412 VEVNEKKDRVTDALNATRAAVEEGIVPGGGCALLRCIPALDNIKPAN-ADQKIGIDIIRRSLRIP 475

  Fly   464 CYTIARNAGVDPNEVLRRVLKGSGNYGYDAAAGEFGDLVVRGIVDPTKVLQSAMTSAAGIASLLA 528
            ..|||:||||:.:.|:.::|:.|...||||..||:.::|.|||:|||||:::|:..|||:||||:
Zfish   476 AMTIAKNAGVEGSLVVEKILQSSTEIGYDAMNGEYVNMVERGIIDPTKVVRTALLDAAGVASLLS 540

  Fly   529 TTEVLITKQPTKPK 542
            |.|.::|:.|.:.|
Zfish   541 TAEAVVTEIPKEEK 554

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hsp60DNP_609656.1 PTZ00114 13..546 CDD:185455 220/534 (41%)
GroEL 18..536 CDD:239460 215/522 (41%)
hspd1NP_851847.1 PTZ00114 24..558 CDD:185455 220/534 (41%)
GroEL 28..548 CDD:239460 215/522 (41%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170581493
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0459
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D183447at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR45633
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
76.810

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