DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Hsp60D and hspd1

DIOPT Version :9

Sequence 1:NP_609656.1 Gene:Hsp60D / 34763 FlyBaseID:FBgn0032525 Length:558 Species:Drosophila melanogaster
Sequence 2:NP_001096355.1 Gene:hspd1 / 100124945 XenbaseID:XB-GENE-980059 Length:576 Species:Xenopus tropicalis


Alignment Length:550 Identity:225/550 - (40%)
Similarity:355/550 - (64%) Gaps:14/550 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 RTFANDIRFGAEARCLLMQGVNVLANAVATTLGPKGRNVLIEQLLISPRITKDGITVANNVQLGN 78
            |.:|.|::|||:||.|::|||::||:|||.|:|||||.|:|||...||::||||:|||..:.|.:
 Frog    24 RQYAKDVKFGADARALMLQGVDLLADAVAVTMGPKGRTVIIEQSWGSPKVTKDGVTVAKAIDLKD 88

  Fly    79 RRQDMGVQLLRQATNNTNNKVGDGTTTATILARGIACQGMHVLRQSKVNVQLLREGILEGSRAVC 143
            :.:::|.:|::...||||.:.||||||||:|||.||.:|...:.:....|: :|.|::....||.
 Frog    89 KYKNIGAKLVQDVANNTNEEAGDGTTTATVLARSIAKEGFEKISKGANPVE-IRRGVMMAVDAVI 152

  Fly   144 DALGEMSQSVDTIGQVEAVAKVALNGDERLAELIGDIILELGDSGVILLKESHSPFDEAKIQEGI 208
            ..|...|:.|.|..::..||.::.|||:.:.::|.|.:..:|..|||.:|:..:..||.:|.||:
 Frog   153 KELKNQSKPVTTPEEIAQVATISANGDQEIGKIISDAMKRVGRRGVITVKDGKTLHDELEIIEGM 217

  Fly   209 TIASGYYSPFF--AKQSHTLELENCLLLLTLAKIDQVEQILPALELARLKERPLLIIAKNFGSDL 271
            ....||.||:|  ..:....|.::..|||:..||..|:.|:||||:|....:||:|||::...:.
 Frog   218 KFDRGYISPYFINTAKGQKCEFQDAYLLLSEKKISSVQSIVPALEIANAHRKPLVIIAEDVDGEA 282

  Fly   272 LKILVLNNLQGRVQVCAVKAPSFGDEQCEEMEDIAFATGGHLLEDAS---SLADLSEEDLGEVME 333
            |..||||.|:..:||.|||||.|||.:..:::|:|.::||.:..:..   ::.|:...|.|:|.|
 Frog   283 LSTLVLNRLKVGLQVVAVKAPGFGDNRKNQLKDMAISSGGVVFGEEGLTLNIEDIQPHDFGKVGE 347

  Fly   334 AVVDAKETHLLQPINVNEEQVQCRIQDIRELIDEAFTDVELDRLKTRLGRLQGHLATIFVGGTSE 398
            .:|...:|.||:. ..::.|::.|||:|.|.::...::.|.::|..||.:|...:|.|.|||||:
 Frog   348 VIVTKDDTMLLKG-KGDKAQIEKRIQEIHEQLESTNSEYEKEKLNERLAKLSDGVAVIKVGGTSD 411

  Fly   399 LEVSERKDRFNDALHAVRVAISDGVVPGGGTAYLRCIPVLDELPPTDIMELQVGREIVKDALRLP 463
            :||:|:|||..|||:|.|.|:.:|:|.|||.|.|||||.|:.|.|.: .:.:||.||::..|::|
 Frog   412 VEVNEKKDRVTDALNATRAAVEEGIVLGGGCALLRCIPALEALNPAN-EDQRVGIEIIRRTLKIP 475

  Fly   464 CYTIARNAGVDPNEVLRRVLKGSGNYGYDAAAGEFGDLVVRGIVDPTKVLQSAMTSAAGIASLLA 528
            ..|||:||||:.:.|:.::::.....||||...||.:||.:||:|||||:::|:..|||:||||.
 Frog   476 AMTIAKNAGVEGSLVVEKIIQSPVEIGYDAMHAEFVNLVEKGIIDPTKVVRTALMDAAGVASLLT 540

  Fly   529 TTEVLITKQPTKPKIPKNQVTKDLAKLVGM 558
            |.|.::|      :|||.:....:|.:.||
 Frog   541 TAEAVVT------EIPKEEKDGGMAGMGGM 564

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hsp60DNP_609656.1 PTZ00114 13..546 CDD:185455 221/536 (41%)
GroEL 18..536 CDD:239460 216/522 (41%)
hspd1NP_001096355.1 GroEL 28..548 CDD:239460 217/528 (41%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D183447at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR45633
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
33.020

Return to query results.
Submit another query.