DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Tehao and RLM3

DIOPT Version :9

Sequence 1:NP_001285901.1 Gene:Tehao / 34761 FlyBaseID:FBgn0026760 Length:795 Species:Drosophila melanogaster
Sequence 2:NP_001329873.1 Gene:RLM3 / 827407 AraportID:AT4G16990 Length:801 Species:Arabidopsis thaliana


Alignment Length:707 Identity:132/707 - (18%)
Similarity:219/707 - (30%) Gaps:281/707 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly    90 VKIEFDAYIFWPEKFLSDLLKTLGVQTVKTIIFRDRTLETVVTRDVLNSGNGYMETSQPENITTW 154
            ::.::|..::|.|:|||::|                     ..:|:.....|.:|..        
plant   242 IRSDYDQKLYWEEQFLSEIL---------------------CQKDIKIEECGAVEQR-------- 277

  Fly   155 HFGSVPGLKKFKFFSHVPELQESIFHGFDTLRDLHLSVNVTTLPGNMLSTVNGTLKTLTIESPGI 219
                   ||..|           :....|.:.|:.|           |.|:.|.::....||..:
plant   278 -------LKHTK-----------VLIVLDDVDDIEL-----------LKTLVGRIRWFGSESKIV 313

  Fly   220 VSFGNPLLRELQQLRNL---------SLALIHPFHER---DKQLQPHFFGSMTNLEEVRLASATS 272
            |....   |||.:..|:         |..|.|....|   .|...||.|..:.: |..::|.   
plant   314 VITQK---RELLKAHNIAHVYEVGFPSEELAHQMFCRYAFGKNSPPHGFNELAD-EAAKIAG--- 371

  Fly   273 SVNR--------SMFKGTNKLQLIKM------NGNDDLMELPGEIFLDQVNLKTLD-LSCNAIVT 322
              ||        |.|:..:|.|.:||      |||    :|  :|..|:::.|..| ::|     
plant   372 --NRPKALKYVGSSFRRLDKEQWVKMLSEFRSNGN----KL--KISYDELDGKGQDYVAC----- 423

  Fly   323 LHEDVFKGLGNLTLLDLSKNRLTNLS-STIFAPLTSLNVLRLNKNSLTAMSPSVFQDVVSLNYIE 386
                                 |||.| |.:.|....|           |:..|:           
plant   424 ---------------------LTNGSNSQVKAEWIHL-----------ALGVSI----------- 445

  Fly   387 MVNTQFYGATLL--MNYEAVVCTNDEACQYKSAEWQCDPRCICWVQRSV---GSLIVDCRG---- 442
            ::|.:..|.|:|  ::|...:....:...|::.|..|....||.:..|.   ||....|..    
plant   446 LLNIRSDGTTILKHLSYNRSMAQQAKIWWYENLERVCKKYNICGIDSSTDGGGSTYGQCSNSQFQ 510

  Fly   443 -----------TSLEELPDLPRTT---------------LLSTVLKVGNNSLTSLPTVSEHSGY- 480
                       ||.:...|.||.:               :...:...|    |..|...|.|.. 
plant   511 RNMDASPGGNKTSNQSTKDSPRASQVEKEKIEYCEPHVYITPAIFSDG----TRAPKYVESSSRR 571

  Fly   481 ------------ANVSGLFLSDNNL----TSLGSGDQLPDNLTHLD--VRGNQIQSLSDEFLLFL 527
                        .|...::.:.||:    .|:..||:........|  :.|      .|:..::.
plant   572 VTQVHHAKTWWPENCEKVYENHNNIYGIDRSIDGGDKFEGKSKVSDGGLDG------KDQGSMYG 630

  Fly   528 QEPNNTMTLSLSGNPITCGCESLSLLFFVR-------------------TNPQRVRDIADIVCTK 573
            |..|:.:.:::..:  ...||.:|.:.|..                   :|||..|.: |....|
plant   631 QSSNSELQINMDAD--NRRCEPVSEMLFKNYNVCSPNAHMPAGLTDVNCSNPQSQRKL-DASLKK 692

  Fly   574 QK----------------------KSFQQMEA--FELCPSYVLLISCVVGGLVIVICLLTVFYLM 614
            .|                      .|..|::.  ||.|...|.:...::.|.:||:..|. |...
plant   693 DKIVHEWIRTGSGFFFDFQGPKSIVSAAQVDEKNFEYCEQGVYITLGILSGGIIVLKHLE-FSRR 756

  Fly   615 FQQELKIWLYNN--------NLCLWWVSEEELDKDKTYDAFISYSHKDEELISKLLP 663
            ..|:.|:|...|        |:|         ..||::|.    ...|..:|.:|.|
plant   757 MAQQAKVWWSENWIKVYQEHNIC---------GIDKSFDG----RFDDRRVIRQLRP 800

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TehaoNP_001285901.1 leucine-rich repeat 185..207 CDD:275380 4/21 (19%)
leucine-rich repeat 209..232 CDD:275380 6/22 (27%)
leucine-rich repeat 233..261 CDD:275380 9/39 (23%)
LRR_RI <261..370 CDD:238064 26/124 (21%)
leucine-rich repeat 262..284 CDD:275380 6/29 (21%)
leucine-rich repeat 285..309 CDD:275380 9/29 (31%)
LRR_8 309..368 CDD:290566 10/60 (17%)
leucine-rich repeat 310..333 CDD:275380 3/23 (13%)
leucine-rich repeat 334..357 CDD:275380 6/23 (26%)
leucine-rich repeat 358..381 CDD:275380 3/22 (14%)
leucine-rich repeat 445..482 CDD:275380 8/64 (13%)
LRR_8 459..516 CDD:290566 13/75 (17%)
leucine-rich repeat 483..505 CDD:275380 5/25 (20%)
LRR_4 486..521 CDD:289563 7/40 (18%)
TIR 643..779 CDD:214587 5/21 (24%)
RLM3NP_001329873.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 44 1.000 Domainoid score I4673
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D282372at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.010

Return to query results.
Submit another query.