DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG10859 and Dync1i2

DIOPT Version :9

Sequence 1:NP_001285898.1 Gene:CG10859 / 34756 FlyBaseID:FBgn0032520 Length:627 Species:Drosophila melanogaster
Sequence 2:NP_446332.2 Gene:Dync1i2 / 116659 RGDID:620174 Length:638 Species:Rattus norvegicus


Alignment Length:486 Identity:96/486 - (19%)
Similarity:174/486 - (35%) Gaps:86/486 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    92 DEESTMRYRKKVERDDSWG-------IEVNQLMHAAMDIS-----------SANNAVNIYEDF-- 136
            :||..:   ||.|.:||..       .|..|::|:...:|           :.:..:||:.|:  
  Rat   188 EEEKIL---KKDEENDSKAPPHELTEEEKQQILHSEEFLSFFDHSTRIVERALSEQINIFFDYSG 249

  Fly   137 --FVDLPEDLGRGISMKIAARGTHVFHDLWIPSRRLMTCEWLNNDPNQFLLFYSNRMSLTPDYTK 199
              ..|...::..|..:.:   ....|.:.|...|.:...:|.:..|...:..|:|          
  Rat   250 RDLEDKEGEIQAGAKLSL---NRQFFDERWSKHRVVSCLDWSSQYPELLVASYNN---------- 301

  Fly   200 QLNTLPDFGNDNPH----AFYIWNLD-DATRPAAHYDSRRVVRVAKVCLRDESYMVGGLQEGQVG 259
                    ..:.||    ...:||:. ..|.|...:..:..|..|.......:.:|||...||:.
  Rat   302 --------NEEAPHEPDGVALVWNMKYKKTTPEYVFHCQSAVMSATFAKFHPNLVVGGTYSGQIV 358

  Fly   260 FW-LTENQGGPKSMCPLE-ACHREATTAICWVHSKLNTEFYSGSLDGSIKYWDTRDLLMPVHEVL 322
            .| ...|:..|....||. |.|......:..|.::......|.|.||.|..|..        ::|
  Rat   359 LWDNRSNKRTPVQRTPLSAAAHTHPVYCVNVVGTQNAHNLISISTDGKICSWSL--------DML 415

  Fly   323 AEPDP--QTVQNRQDAHGVTFLEFEYTIPVRFIFCTDMGYLFVGNRKGTTPQDTIVAAYQLFAGP 385
            :.|..  :.|..:..|..||.:.|.......|:..::.|.::...|.|:  :..|...::...||
  Rat   416 SHPQDSMELVHKQSKAVAVTSMSFPVGDVNNFVVGSEEGSVYTACRHGS--KAGISEMFEGHQGP 478

  Fly   386 IRCV----------MRNPFFVKNFLVVGDWRVRIWSEEVKNCPSTFYFRRPNQLLSGAWSTGRCS 440
            |..:          ..:.|...:|    ||.|::|:.: .|.|...:....:.:....||....:
  Rat   479 ITGIHCHAAVGAVDFSHLFVTSSF----DWTVKLWTTK-NNKPLYSFEDNSDYVYDVMWSPTHPA 538

  Fly   441 LFCIGDNMGNLEFWDLLMSHKRPI--LTIKYKYAVTHLVFKPDGTMLTVSLANGDCLMLRLEEGM 503
            ||...|.||.|:.|:|....:.|.  ::::...|:..:.:...|..:.|..:.|..::..:.|.:
  Rat   539 LFACVDGMGRLDLWNLNNDTEVPTASISVEGNPALNRVRWTHSGREIAVGDSEGQIVIYDVGEQI 603

  Fly   504 RSATNKEKSLMMSMFEREIQRCKLLEAREEE 534
            ....|.|    .:.|.|.:.......|..||
  Rat   604 AVPRNDE----WARFGRTLAEINASRADAEE 630

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG10859NP_001285898.1 WD40 <245..310 CDD:295369 18/66 (27%)
WD40 261..>512 CDD:225201 55/266 (21%)
WD40 279..492 CDD:295369 45/226 (20%)
WD40 repeat 284..332 CDD:293791 10/49 (20%)
WD40 repeat 386..422 CDD:293791 9/45 (20%)
WD40 repeat 429..454 CDD:293791 8/24 (33%)
Dync1i2NP_446332.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..135
Interaction with DYNLT1. /evidence=ECO:0000269|PubMed:27502274 133..165
Dynein_IC2 135..163 CDD:402922
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 154..209 7/23 (30%)
WD 1 277..326 10/66 (15%)
WD40 repeat 282..331 CDD:293791 10/66 (15%)
WD40 329..>599 CDD:225201 59/284 (21%)
WD 2 330..370 9/39 (23%)
WD40 repeat 339..377 CDD:293791 10/37 (27%)
WD 3 379..420 10/48 (21%)
WD40 repeat 385..426 CDD:293791 9/48 (19%)
WD 4 429..469 8/41 (20%)
WD40 repeat 434..481 CDD:293791 11/48 (23%)
WD 5 474..519 11/49 (22%)
WD40 repeat 489..521 CDD:293791 8/36 (22%)
WD40 repeat 527..565 CDD:293791 11/37 (30%)
WD 6 568..607 5/38 (13%)
WD40 repeat 573..599 CDD:293791 3/25 (12%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1587
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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