DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment loqs and Adarb2

DIOPT Version :9

Sequence 1:NP_609646.1 Gene:loqs / 34751 FlyBaseID:FBgn0032515 Length:465 Species:Drosophila melanogaster
Sequence 2:XP_017171136.1 Gene:Adarb2 / 94191 MGIID:2151118 Length:747 Species:Mus musculus


Alignment Length:495 Identity:106/495 - (21%)
Similarity:153/495 - (30%) Gaps:157/495 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    42 NLVGLGNGNAVSGSPVKGAPLGQRHVKLK-KEKIS------AQVAQLSQPG-------------- 85
            :::|.|.|:....|.:|.....:|..:.| |:|:|      |....|| ||              
Mouse     3 SVLGSGRGSGGLSSQLKCKSKRRRRRRSKRKDKVSILSTFLAPFKYLS-PGTTNTEDEDNLSTSS 66

  Fly    86 -----QLQLSDVGDPALAGGSGLQGGVGLMGVILPSDEALKFVSETDANG-------LAMK---- 134
                 ...:|::|...|..|...:|..       ||.:..:.:.|  .||       |..|    
Mouse    67 AEVKENRNVSNLGTRPLPPGDWARGST-------PSVKRKRPLEE--GNGGHFCKLQLIWKKLSW 122

  Fly   135 --TPVSILQELLSRRGITPG--YELVQIEGAIHEPTFRFRVSFKDKDTPFTAMGAGRSKKEAKHA 195
              ||.:.|.:|   ..:.||  |.:|...|.:|.|.|...|....    .|..|.|.:||:||..
Mouse   123 SVTPKNALVQL---HELKPGLQYRMVSQTGPVHAPVFAVAVEVNG----LTFEGTGPTKKKAKMR 180

  Fly   196 AARALIDKLIGAQLP--------------------------------ESPSSSAGPSVTGLTVAG 228
            ||...:...:  |.|                                |...||......|.....
Mouse   181 AAEMALKSFV--QFPNAFQAHLAMGSSTSPCTDFTSDQADFPDTLFKEFEPSSKNEDFPGCHPVD 243

  Fly   229 SGGDGNANATG----------GGDASDKT------VG--NPIGWLQEMCMQRRWPPPSYETETEV 275
            :....:|...|          |....|::      :|  ||:..|.|:....|:...|...|.  
Mouse   244 TEFLSSAYRRGRLLYHTLDLMGQALPDRSRLAPGALGERNPVVVLNELRSGLRYVCLSETAEK-- 306

  Fly   276 GLPHERLFTIACSILNYREMGKGKSKKIAKRLAAHRMWMRLQETPIDSGKISDSICGELEGEPRS 340
              |..:.|.:|..:......|.|:|||:||..||......|.:..: .|.|..          ||
Mouse   307 --PRVKSFVMAVCVDGRTFEGSGRSKKLAKGQAAQAALQALFDIRL-PGHIPS----------RS 358

  Fly   341 SENYYGELKDISVPTLTTQHSNK-------VSQFHKTLKNATGKKLLKLQKTCLKNNKIDYIKLL 398
            ..|...:....||..|.||...:       |...||||......|.|..:               
Mouse   359 KSNLLPQDFADSVSQLVTQKFRELTVGLTSVYARHKTLAGIVMTKGLDTK--------------- 408

  Fly   399 GEIATENQFEVTYVDIEEKTFSGQFQCLVQLSTLPVGVCH 438
                   |.:|..:....|..||:.   :....|.|..||
Mouse   409 -------QAQVIVLSSGTKCISGEH---ISDQGLVVNDCH 438

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
loqsNP_609646.1 DSRM 136..204 CDD:214634 21/69 (30%)
DSRM 250..316 CDD:238007 19/65 (29%)
DSRM 394..460 CDD:214634 9/45 (20%)
Adarb2XP_017171136.1 DSRM_RED2_rpt1 122..195 CDD:380725 24/81 (30%)
DSRM_SF 276..349 CDD:381777 21/76 (28%)
ADEAMc 366..739 CDD:214718 21/98 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167848544
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.840

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