DRSC/TRiP Functional Genomics Resources

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Protein Alignment loqs and Stau1

DIOPT Version :10

Sequence 1:NP_609646.1 Gene:loqs / 34751 FlyBaseID:FBgn0032515 Length:465 Species:Drosophila melanogaster
Sequence 2:NP_445888.1 Gene:Stau1 / 84496 RGDID:621778 Length:495 Species:Rattus norvegicus


Alignment Length:407 Identity:96/407 - (23%)
Similarity:151/407 - (37%) Gaps:111/407 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   134 KTPVSILQELLSRRGITPGYE---LVQI---EGAIHEPTFRFRVSFKDKDTPFTAMGAGRSKKEA 192
            |:.:|.:.|:..:|.:...:|   |.|:   .|..|...|..|||..:    |...|.|:|||.:
  Rat    95 KSEISQVFEIALKRNLPVNFESFPLTQVARESGPPHMKNFVTRVSVGE----FVGEGEGKSKKIS 155

  Fly   193 KHAAARALIDKLIGAQLPESPS---------SSAGPSVTGLTVAGSGGDGNANATGGGDASDKTV 248
            |..||||::::|  .:||..|:         ..:.|:.. |..|...|.|.              
  Rat   156 KKNAARAVLEQL--RRLPPLPAVERVKPRIKKKSQPTCK-LQTAPDYGQGM-------------- 203

  Fly   249 GNPIGWLQEMCMQRRWPPPSYETETEVGLPHERLFTIACSILNYREMGKGKSKKIAKRLAAHRMW 313
             |||..|.::...::...|.|...||.|||..|.|.:...:.::...|.|.:||:|||.||..|.
  Rat   204 -NPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKVGHHTAEGAGTNKKVAKRNAAENML 267

  Fly   314 MRL-----------------QETPI----DSGKISDSICGELEGEPRSSENYYGELKDISVPTLT 357
            ..|                 ::||:    |..|::     ..|..|........:..:..:|.|:
  Rat   268 EILGFKVPQAQPAKPALKSEEKTPVKKPGDGRKVT-----FFEPSPGDENGTSNKEDEFRMPYLS 327

  Fly   358 TQ--------------HSNKVSQFHKTLKNA--------------TGKKLL-----KLQKTCLKN 389
            .|              .:..|||.|.|...|              ..::||     ...:|.||:
  Rat   328 HQQLPAGILPMVPEVAQAVGVSQGHHTKDFARAAPNPAKATVTAMIARELLYGGTSPTAETILKS 392

  Fly   390 N----------KIDYIKLLGEIATENQFEVTYVDIEEKTFSGQFQC--LVQLSTLPVGVCHGSGP 442
            |          :....:.|..::....|:|.|.|..:   :.:.:|  |:..|:.|..|.||.|.
  Rat   393 NISSGHVPHGPRTRPSEQLYYLSRAQGFQVEYKDFPK---NNKNECVSLINCSSQPPLVSHGIGK 454

  Fly   443 TAADAQRHAAQNALEYL 459
            ........||.|.|:.|
  Rat   455 DVESCHDMAALNILKLL 471

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
loqsNP_609646.1 DSRM_PRKRA-like_rpt1 134..206 CDD:380691 25/77 (32%)
DSRM_PRKRA-like_rpt2 250..316 CDD:380692 23/65 (35%)
DSRM_PRKRA-like_rpt3 393..463 CDD:380693 18/69 (26%)
Stau1NP_445888.1 DSRM_SF 1..70 CDD:444671
DSRM_SF 95..167 CDD:444671 24/75 (32%)
DSRM_STAU1_rpt4 194..279 CDD:380714 27/99 (27%)
Staufen_C 366..475 CDD:465131 24/109 (22%)
Blue background indicates that the domain is not in the aligned region.

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