DRSC/TRiP Functional Genomics Resources

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Protein Alignment loqs and Strbp

DIOPT Version :10

Sequence 1:NP_609646.1 Gene:loqs / 34751 FlyBaseID:FBgn0032515 Length:465 Species:Drosophila melanogaster
Sequence 2:XP_063140781.1 Gene:Strbp / 84476 RGDID:620673 Length:715 Species:Rattus norvegicus


Alignment Length:271 Identity:68/271 - (25%)
Similarity:106/271 - (39%) Gaps:47/271 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    63 GQRHVKLKKEKISAQVAQLSQPGQLQLSDVGDPALAGGSGL----QGGVGLMGVILPSDEALKFV 123
            ||.:..|:.:.:.:     |:|.|.....|.|...||.|.|    :.|:|       .|:.....
  Rat   357 GQIYKVLEMDPLPS-----SKPFQKYSWSVTDKEGAGSSALKRPFEDGLG-------DDKDPNKK 409

  Fly   124 SETDANGLAMKTPVSILQELLSRRGITPG--YELVQIEGAIHEPTFRFRVSFKDKD-TPFTAMGA 185
            .:.:...:.....:.::..|:....|.||  |:|:...|.:|.|.|...|   |.| |.:.|  :
  Rat   410 MKRNLRKILDSKAIDLMNALMRLNQIRPGLQYKLLSQSGPVHAPVFTMSV---DVDGTTYEA--S 469

  Fly   186 GRSKKEAK-HAAARAL--------IDKLIGAQLPESPSSSAGPSVTGLTVAGSGGDGNANATGGG 241
            |.|||.|| |.|.:.|        .|..|.....:..|.:...:.| ::...|...||.......
  Rat   470 GPSKKTAKLHVAVKVLQAMGYPTGFDADIECMSSDEKSDNESKNDT-VSSNSSNNTGNCTTETSS 533

  Fly   242 DASDKTVG--------NPIGWLQEMCMQRRWPPPSYETETEVGLPHERLFTIACSILNYREMGKG 298
            ....:|.|        ||:..|.|   :||  ...||..:|.|..|::.|.:...:...:..|.|
  Rat   534 TLEVRTQGPILTASGKNPVMELNE---KRR--GLKYELISETGGSHDKRFVMEVEVDGQKFRGAG 593

  Fly   299 KSKKIAKRLAA 309
            .:||:||..||
  Rat   594 PNKKVAKASAA 604

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
loqsNP_609646.1 DSRM_PRKRA-like_rpt1 134..206 CDD:380691 25/83 (30%)
DSRM_PRKRA-like_rpt2 250..316 CDD:380692 20/60 (33%)
DSRM_PRKRA-like_rpt3 393..463 CDD:380693
StrbpXP_063140781.1 None
Blue background indicates that the domain is not in the aligned region.

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