DRSC/TRiP Functional Genomics Resources

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Protein Alignment loqs and Ilf3

DIOPT Version :10

Sequence 1:NP_609646.1 Gene:loqs / 34751 FlyBaseID:FBgn0032515 Length:465 Species:Drosophila melanogaster
Sequence 2:NP_001423363.1 Gene:Ilf3 / 84472 RGDID:619734 Length:915 Species:Rattus norvegicus


Alignment Length:192 Identity:53/192 - (27%)
Similarity:76/192 - (39%) Gaps:27/192 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly   136 PVSILQELLSRRGITPG--YELVQIEGAIHEPTFRFRVSFKDKDTPFTAMGAGRSKKEAK-HAAA 197
            |...:..|:....:.||  |:|:...|.:|.|.|...|.....    |...:|.|||.|| |.|.
  Rat   417 PPQAMNALMRLNQLKPGLQYKLISQTGPVHAPIFTMSVEVDGS----TFEASGPSKKTAKLHVAV 477

  Fly   198 RALIDKLI--GAQLPES-------------PSSSAGPSVTGLTVAGSGGDGNANATGGGDASDKT 247
            :.|.|..:  ||:..:|             |:..|.|.|.......|....:...|..|....|.
  Rat   478 KVLQDMGLPTGAEGRDSSKGEDSAEESDGKPAVVAPPPVVEAVSNPSSVFPSDATTEQGPILTKH 542

  Fly   248 VGNPIGWLQEMCMQRRWPPPSYETETEVGLPHERLFTIACSILNYREMGKGKSKKIAKRLAA 309
            ..||:..|.|   :||  ...||..:|.|..|::.|.:...:...:..|.|.:||:||..||
  Rat   543 GKNPVMELNE---KRR--GLKYELISETGGSHDKRFVMEVEVDGQKFQGAGSNKKVAKAYAA 599

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
loqsNP_609646.1 DSRM_PRKRA-like_rpt1 134..206 CDD:380691 22/74 (30%)
DSRM_PRKRA-like_rpt2 250..316 CDD:380692 20/60 (33%)
DSRM_PRKRA-like_rpt3 393..463 CDD:380693
Ilf3NP_001423363.1 DZF 106..360 CDD:128842
DSRM_ILF3_rpt1 416..488 CDD:380739 22/74 (30%)
DSRM_ILF3_rpt2 538..609 CDD:380741 21/67 (31%)
Blue background indicates that the domain is not in the aligned region.

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