DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment loqs and tarbp2

DIOPT Version :10

Sequence 1:NP_609646.1 Gene:loqs / 34751 FlyBaseID:FBgn0032515 Length:465 Species:Drosophila melanogaster
Sequence 2:XP_012812551.1 Gene:tarbp2 / 595034 XenbaseID:XB-GENE-491800 Length:361 Species:Xenopus tropicalis


Alignment Length:345 Identity:121/345 - (35%)
Similarity:178/345 - (51%) Gaps:31/345 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly   134 KTPVSILQELLSRRGITPGYELVQIEGAIHEPTFRFRVSFKDKD------TPFTAMGAGRSKKEA 192
            |||:|:|||..:|.|.||.|:|::.||..|:|.|.||||..|.:      .|.:..|.|.|||.|
 Frog    28 KTPISLLQEYGTRVGKTPVYDLLKAEGQAHQPNFTFRVSVGDINCTGQCSAPPSTRGQGPSKKAA 92

  Fly   193 KHAAARALIDKLIGAQL------PESPSSSAGPSVTGLTVAG-SGGDGNANAT---GGGDASDKT 247
            ||.||...:..|.|..:      ..|...|....|....||. |....|.|.|   ....::.::
 Frog    93 KHKAAEVALSLLKGGDMFGMMCEENSVMLSVEQPVELREVADVSPPPTNRNHTIEMKPPLSAQQS 157

  Fly   248 VGNPIGWLQEMCMQRRWPPPSYETETEVGLPHERLFTIACSILNYREMGKGKSKKIAKRLAAHRM 312
            ..||:|.|||:.:|:.|..|.|....|.|..|.:.||:.|.:..:.|:|.|.|||:|||.||.:|
 Frog   158 ECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFLEIGSGTSKKLAKRNAAAKM 222

  Fly   313 WMRLQETPIDSGKISDSICGELEGEPRSSENYYGELKDISVPTLTTQHSNKVSQFHKTLKNATGK 377
            .:::...|.:..:         .||....|:.:      |:..|........:....:|:|::|:
 Frog   223 LLQIHRVPAEHRE---------SGETEPEEDQF------SMGKLDGSRGRGTACTWDSLRNSSGE 272

  Fly   378 KLLKLQKTCLKNNKIDYIKLLGEIATENQFEVTYVDIEEKTFSGQFQCLVQLSTLPVGVCHGSGP 442
            |:|.|:...|......:..||.:::.|..|:::|:||:|.:.||.:||||:|||.|..|||||..
 Frog   273 KILHLRSNPLTILSSGFCSLLQDLSEEQSFQISYLDIDEPSLSGLYQCLVELSTQPTTVCHGSAT 337

  Fly   443 TAADAQRHAAQNALEYLKIM 462
            |...|:.:||.|||:|||||
 Frog   338 TRDAARANAAHNALQYLKIM 357

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
loqsNP_609646.1 DSRM_PRKRA-like_rpt1 134..206 CDD:380691 35/77 (45%)
DSRM_PRKRA-like_rpt2 250..316 CDD:380692 28/65 (43%)
DSRM_PRKRA-like_rpt3 393..463 CDD:380693 35/70 (50%)
tarbp2XP_012812551.1 DSRM_TARBP2_rpt1 26..107 CDD:380719 35/78 (45%)
DSRM_TARBP2_rpt2 160..226 CDD:380681 28/65 (43%)
DSRM_TARBP2_rpt3 287..358 CDD:380722 35/71 (49%)

Return to query results.
Submit another query.