DRSC/TRiP Functional Genomics Resources

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Protein Alignment loqs and strbp

DIOPT Version :10

Sequence 1:NP_609646.1 Gene:loqs / 34751 FlyBaseID:FBgn0032515 Length:465 Species:Drosophila melanogaster
Sequence 2:XP_021334939.1 Gene:strbp / 557957 ZFINID:ZDB-GENE-030729-18 Length:696 Species:Danio rerio


Alignment Length:400 Identity:96/400 - (24%)
Similarity:138/400 - (34%) Gaps:135/400 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    38 RHYNNLVGLGNGNAVSGSPVKGAPLGQRHVKLKKEKISAQVAQLSQP---GQLQLSDVGDPALAG 99
            ||..|.|       .:..|:||.||     :|..||   .:|..::|   |: .|..|.: .||.
Zfish   242 RHMCNRV-------PAWEPLKGWPL-----ELICEK---AIATCNRPLGAGE-ALRRVME-CLAS 289

  Fly   100 GSGLQGGVGL-----------------------------------MGVI--------LPSDEALK 121
            |..|.||.||                                   .|.|        |||.:..:
Zfish   290 GILLPGGPGLHDPCEKEPTNTLSAMTDEEAEAITSNAQHALRLMAFGQIYKVLDMDPLPSSKPSQ 354

  Fly   122 FVSETDANGLAMKTPV--------------------SILQE-----------LLSRRGITPG--Y 153
            ....:|..||.:|.|.                    ::|..           |:....|.||  |
Zfish   355 KYPWSDKEGLGLKRPYEDGLMDDKDLIKKMKRNLRKAVLDSKAIDSNQPMNALMRLNQIRPGLQY 419

  Fly   154 ELVQIEGAIHEPTFRFRVSFKDKD-TPFTAMGAGRSKKEAK-HAAARAL--------IDKLIGAQ 208
            :|:...|.:|.|.|...|   |.| |.:.|  :|.|||.|| |.|.:.|        .|..:.:.
Zfish   420 KLLSQSGPVHAPVFTMSV---DVDGTVYEA--SGSSKKTAKLHVAVKVLQAMGYPTGFDTDLDSM 479

  Fly   209 LPESPSSSAGPSVTGLTVAGSGGDGNANATGGGDASD----KTVG--------NPIGWLQEMCMQ 261
            ..:..|...|.|       .|....:.|.|...|:|:    :|.|        ||:..|.|   :
Zfish   480 SADEKSDGEGKS-------ESSTHSSNNTTHSSDSSNTLEVRTQGPILTASGKNPVMELNE---K 534

  Fly   262 RRWPPPSYETETEVGLPHERLFTIACSILNYREMGKGKSKKIAKRLAAHRMWMRLQETPIDSGKI 326
            ||  ...||..:|.|..|::.|.:...:...:..|.|.:||:||..||.....:|...|..:|..
Zfish   535 RR--GLKYELISESGGSHDKRFVMEVEVDGQKFRGAGPNKKVAKASAALAALEKLFSGPNAAGNK 597

  Fly   327 SDSICGELEG 336
            ...|..:.:|
Zfish   598 KKKIIPQSKG 607

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
loqsNP_609646.1 DSRM_PRKRA-like_rpt1 134..206 CDD:380691 28/114 (25%)
DSRM_PRKRA-like_rpt2 250..316 CDD:380692 20/65 (31%)
DSRM_PRKRA-like_rpt3 393..463 CDD:380693
strbpXP_021334939.1 DZF 97..350 CDD:128842 29/124 (23%)
DSRM_STRBP_rpt1 399..482 CDD:380738 25/87 (29%)
DSRM_STRBP_rpt2 525..588 CDD:380740 20/67 (30%)
Blue background indicates that the domain is not in the aligned region.

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