DRSC/TRiP Functional Genomics Resources

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Protein Alignment loqs and stau2

DIOPT Version :10

Sequence 1:NP_609646.1 Gene:loqs / 34751 FlyBaseID:FBgn0032515 Length:465 Species:Drosophila melanogaster
Sequence 2:NP_001011376.2 Gene:stau2 / 496843 XenbaseID:XB-GENE-491508 Length:706 Species:Xenopus tropicalis


Alignment Length:399 Identity:94/399 - (23%)
Similarity:153/399 - (38%) Gaps:111/399 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   125 ETDANGLAMKTPVSILQELLSRRGITPGYELVQIEGAIHEPTFRFRVSFKDKDTPFTAMGAGRSK 189
            :.|||    |:.:|::.|:..:|.::..:|:::..|..|..:|..||:..:    |||.|.|.||
 Frog   301 DKDAN----KSEISLVFEISLKRNLSLSFEVIKESGPPHMKSFVTRVTVGE----FTAEGEGNSK 357

  Fly   190 KEAKHAAARALIDKLIGAQLPESP---------------SSSAGPSVTGLTVAGSGGDGNANATG 239
            |.||..||.|::.:|  .:||..|               ...|.|..         |.|.     
 Frog   358 KLAKRRAAAAVLQEL--RKLPPLPVIEKPRIYIKRRPKNIIKASPEY---------GQGM----- 406

  Fly   240 GGDASDKTVGNPIGWLQEMCMQRRWPPPSYETETEVGLPHERLFTIACSILNYREMGKGKSKKIA 304
                      |||..|.::...::...|.|...:|.|:...|.|.:...:......|.|.:||.|
 Frog   407 ----------NPISRLAQIQQAKKEKEPEYVLLSERGIQRRREFVMQVKVGEETATGTGPNKKTA 461

  Fly   305 KRLAAHRMWMRL---QETPI--DSGKISD--------SICGELEGEPRS----SENYYGEL---- 348
            ||.||..|.::|   ..:|:  .:||..:        |...:....|:.    |.:.|.|:    
 Frog   462 KRNAAEAMLLQLGYKASSPVVEKTGKRGENPDWDEQNSGIADQTSTPKGILHLSPDVYQEMEASR 526

  Fly   349 -KDISVPTLTTQHSNKVSQ----FHKT--------------LKNA----------TGKKLLKLQK 384
             |.:..|.::...|.:::|    |..|              |.|.          |||.|:....
 Frog   527 NKTVPAPAISYLSSKEMNQASSSFFSTSVSQSCTAAIARELLTNGTSPTAEAIGFTGKNLMCHSS 591

  Fly   385 TCLKNNKIDYIKLLGEIATENQFEVTYVDIEEKTFSGQFQCLVQLSTLPVGVC-HGSGPTAADAQ 448
            |...:.:::|      :|.....:|.|.|.:    ||. ..|..|:..||.:. ||.|.:...:.
 Frog   592 TVQPSKQLEY------LAGIQGLQVNYSDRQ----SGN-DFLTCLTLSPVQMTFHGIGSSLEASH 645

  Fly   449 RHAAQNALE 457
            ..||.:||:
 Frog   646 DQAALSALK 654

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
loqsNP_609646.1 DSRM_PRKRA-like_rpt1 134..206 CDD:380691 24/71 (34%)
DSRM_PRKRA-like_rpt2 250..316 CDD:380692 20/65 (31%)
DSRM_PRKRA-like_rpt3 393..463 CDD:380693 18/66 (27%)
stau2NP_001011376.2 DSRM_STAU2_rpt1 85..152 CDD:380709
DSRM_STAU2_rpt2 198..279 CDD:380711
DSRM_STAU2_rpt3 306..372 CDD:380713 23/69 (33%)
DSRM_STAU2_rpt4 404..489 CDD:380715 25/99 (25%)
Staufen_C 559..660 CDD:465131 25/107 (23%)
Blue background indicates that the domain is not in the aligned region.

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